Locus 5382

Sequence ID 3L_DroMel_CAF1
Location 14,790,183 – 14,790,289
Length 106
Max. P 0.853255
window8515

overview

Window 5

Location 14,790,183 – 14,790,289
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 75.35
Mean single sequence MFE -24.96
Consensus MFE -12.80
Energy contribution -13.04
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.96
Structure conservation index 0.51
SVM decision value 0.80
SVM RNA-class probability 0.853255
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14790183 106 + 23771897
UCCGGAAUGUUUAAAAGAGUUCCGACAUCGGAAUACUUAGUAGGGGGAACAUAAAUUUUGCUCGUAUAAGAAUGAUUU-UUCCUGGAGUUUUUCUUUUUUUGUUCUG
..(((((((...((((((((((((....))))))((((..((((..((((((...(((((......)))))))).)))-..))))))))...))))))..))))))) ( -26.00)
>DroSec_CAF1 33349 106 + 1
UCUGGAAUGUUUACCAGAGUUCCGACAUCGGAAUACUUAGCAGGGGGAACAUUAAUUUUCCUCGUAUAAGAAUGCCUU-UUUCCGGAUUUUUUAUAUUUUUGUUCUG
(((((........)))))((((((....))))))....(((((((((((........))))))(((((((((..((..-.....))..)))))))))..)))))... ( -27.10)
>DroSim_CAF1 25602 106 + 1
UCUGGAAUGUUUAACAGAGUUCCGACAUCGGAAUACUUAGCAGGGGGAACAUUAAUUUUCCUCGUAUAAGAANNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN
((((..........))))((((((....)))))).((((...(((((((.......)))))))...))))........-............................ ( -20.50)
>DroEre_CAF1 32760 105 + 1
UUAGGAAUGUUUAACAGAGUUCCGACAUCGGAAUACUUAGCAGGGGGAACCUUACUUUUCCUCCAAUAAAAAUGCUUU-CUACUGAAGUUCUUCUC-UUCUGUUUUG
.((((((((((....((.((((((....)))))).)).))))(((((((........)))))))...........)))-)))..((((.......)-)))....... ( -24.80)
>DroYak_CAF1 35124 105 + 1
UUAGGAAUGUUUAACAGAGUUCCGACAUCGGAAUACUUAGCAAGGGGAACAUAACUUUUCC-CCAAUAAAAAUGCUUUUUUGCUGCAGUUUUUCUU-UUUUGCUCUG
..............((((((((((....))))..(((((((..((((((........))))-))...(((((....))))))))).))).......-....)))))) ( -26.40)
>consensus
UCAGGAAUGUUUAACAGAGUUCCGACAUCGGAAUACUUAGCAGGGGGAACAUUAAUUUUCCUCGUAUAAGAAUGCUUU_UU_CUGGAGUUUUUCUU_UUUUGUUCUG
.......((((....((.((((((....)))))).)).)))).((((((........))))))............................................ (-12.80 = -13.04 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:55 2006