Locus 5380

Sequence ID 3L_DroMel_CAF1
Location 14,789,423 – 14,789,540
Length 117
Max. P 0.585930
window8509

overview

Window 9

Location 14,789,423 – 14,789,540
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 80.70
Mean single sequence MFE -28.02
Consensus MFE -19.88
Energy contribution -19.44
Covariance contribution -0.44
Combinations/Pair 1.26
Mean z-score -1.55
Structure conservation index 0.71
SVM decision value 0.10
SVM RNA-class probability 0.585930
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14789423 117 - 23771897
ACGAACGGAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUCAUGCACCGUGCAAAAACUAACUACAG-ACAUUUAAGAAUAGUUGUUGCAUUC
.((...(((....))).............(((((....)))))..))...((((((((((.....))))))))))((((.(((((.......-...........))))).)))).... ( -32.17)
>DroSec_CAF1 32595 112 - 1
ACGAACGGAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUCAUGCACUGUAAAAAAACUAUCUACUAUCUAUUCU------AUUGGUGCAUUG
......(((....))).............(((((....)))))(((....((((((((((.....)))))))))).............((((........------..)))))))... ( -26.30)
>DroSim_CAF1 24839 117 - 1
ACGAACGGAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUCAUGCACCGUGCAAAAACUAUCUACAG-AAAUUUGAGAAUAGUUGCUGCAUUG
.((...(((....))).............(((((....)))))..))...((((((((((.....))))))))))(((..((((((((.(((-....))))).))))))..))).... ( -36.00)
>DroEre_CAF1 32001 103 - 1
ACGAACGUAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCUAGAACGGUGGGUGGGUUUCGUGCACUGGGCAA-AAUUAUCGAAGG-AAAUUCGAGAAU-------------
.((((.(((((((((((...(........(((((....))))).(((.....))))..)))))))).))).........-.....((....)-)..)))).....------------- ( -23.00)
>DroYak_CAF1 34355 115 - 1
ACGAGAGGAGAGAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUUGUGCACUGCGGAA-AAUAAUCUAACG-AAAUUCGAGAAUAAUUGGCACC-UG
.(....)..((((((((..(((......(((((.........))))).......))).))))))))((((.........-.....((....)-)....(((......))))))).-.. ( -22.62)
>consensus
ACGAACGGAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUCAUGCACUGUGCAAAAACUAUCUACAG_AAAUUCGAGAAUAAUUGGUGCAUUG
.((((.(((....))).............(((((....)))))........(((((..((.....))..)))))......................)))).................. (-19.88 = -19.44 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:49 2006