Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,784,466 – 14,784,578 |
Length | 112 |
Max. P | 0.814693 |
Location | 14,784,466 – 14,784,578 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.10 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -22.97 |
Energy contribution | -23.08 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.17 |
Mean z-score | -2.32 |
Structure conservation index | 0.82 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14784466 112 - 23771897 CCACUCAGCUGGCU-CAGCUUCAUAAGCAUCACUCAAAGCAUUUCAG---CUGCUGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU----UUU ((((((.(((.((.-..(((.....)))........(((((...(((---(....))))...)))))....))....))).))))))..........................----... ( -28.90) >DroSec_CAF1 27482 110 - 1 CCACUCAGCUGGCU-CAGCUUCAUAAGCAUCACUCAAAGCAUUUCAG---CUGCUGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU------U ((((((.(((.((.-..(((.....)))........(((((...(((---(....))))...)))))....))....))).))))))..........................------. ( -28.90) >DroSim_CAF1 19677 110 - 1 CCACUCAGCUGGCU-CAGCUUCAUAAGCAUCACUCAAAGCAUUUCAG---CUGCGGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU------U ((((((.(((.((.-..(((.....)))........(((((...(((---(....))))...)))))....))....))).))))))..........................------. ( -28.70) >DroEre_CAF1 26740 110 - 1 CCACUCAGCUGGCU-CGGCUUCAUAGGCAUCACUCAAAACGCUUCAG---CUGCUGCCGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUUGCUUCUUUAUUAUUACGUUUU------U ((((((.((((((.-(((((....((((............)))).))---)))..)))....(((......)))...))).))))))..........................------. ( -27.30) >DroYak_CAF1 27683 113 - 1 CCACUCAGCUGGCU-CAGCUUCAUAGGCAUCACUCAAAGCAUUUCAGUUGCUGCUGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU------U ((((((.(((....-..((...(((((((..((.((.((((.......))))..))..))..)))))))..))....))).))))))..........................------. ( -27.30) >DroAna_CAF1 26624 117 - 1 CCACUCAGCUGGCUUCAGCUUCAUAAGCAUCAUUCAAACCGUUUCUG---CUGCCGCUGCCUUGCUUAUUUGCAUCAAGCCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUUAUUUUUU ((((((.((((((..(.((..((.((((............)))).))---..)).)..))).(((......)))...))).))))))................................. ( -26.30) >consensus CCACUCAGCUGGCU_CAGCUUCAUAAGCAUCACUCAAAGCAUUUCAG___CUGCUGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU______U (((((((((((....)))))..(((((((..((....((((..........))))...))..)))))))............))))))................................. (-22.97 = -23.08 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:43 2006