Locus 5374

Sequence ID 3L_DroMel_CAF1
Location 14,783,275 – 14,783,395
Length 120
Max. P 0.998317
window8498

overview

Window 8

Location 14,783,275 – 14,783,395
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -34.22
Consensus MFE -30.82
Energy contribution -31.38
Covariance contribution 0.56
Combinations/Pair 1.16
Mean z-score -2.58
Structure conservation index 0.90
SVM decision value 3.07
SVM RNA-class probability 0.998317
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14783275 120 + 23771897
AAGGAAAUUAUACUCAAAUUGGCUUUCAGCUUUGGCGCACGCAAGUGGAAAAUAUUUUCAUCUUCAUCAAGAUAUUUUUGUGUGUGCUUGAGUGGGGAUAAAGUGGAGUAGAGUUGCUUU
((((.((((.(((((...((...(..(.((((.((((((((((((..((((....))))(((((....)))))...)))))))))))).)))).)..)..))...))))).)))).)))) ( -34.60)
>DroSec_CAF1 26268 120 + 1
AAGGAAAUUAUACUCAAAUUGGCUUUCAGCUUUGGCGCACGCAAGUGGAAAAUAUUUUCAUCUUCUUCAAGAUAUUUUUGUGUGUGCUUGAGUGGGGAUAAAGUGGAGUAGAGUUGCUUU
((((.((((.(((((...((...(..(.((((.((((((((((((..((((....))))(((((....)))))...)))))))))))).)))).)..)..))...))))).)))).)))) ( -34.60)
>DroSim_CAF1 18497 120 + 1
AAGGAAAUUAUACUCAAAUUGGCUUUCAGCUUUGGCGCACGCAAGUGGAAAAUAUUUUCAUCUUCAUCAAGAUAUUUUUGUGUGUGCUUGAGUGGGGAUAAAGUGGAGUAGAGUUGCUUU
((((.((((.(((((...((...(..(.((((.((((((((((((..((((....))))(((((....)))))...)))))))))))).)))).)..)..))...))))).)))).)))) ( -34.60)
>DroEre_CAF1 25547 120 + 1
AAGGAAAUUAUACUCAAAUUGGCUUUCAGCUUUGGCGCACGCAAGUGGAAAAUAUUUUCAUCUUCAUCAAGAUAUUUUUGUGUGUGCUUGAGUGGGGAUAAAGUGGAGUAGAGUUGCUUU
((((.((((.(((((...((...(..(.((((.((((((((((((..((((....))))(((((....)))))...)))))))))))).)))).)..)..))...))))).)))).)))) ( -34.60)
>DroYak_CAF1 26493 120 + 1
AAGGAAAUUAUACUCAAAUUGGCUUUCAGCUUUGGCGCACGCAAGUGGAAAAUAUUUUCAUCUUCAUCAAGAUAUUUUUGUGUGCGCUUGAGUGGGGAUAAAGUGGAGUAGAGUUGCUUU
((((.((((.(((((...((...(..(.((((.((((((((((((..((((....))))(((((....)))))...)))))))))))).)))).)..)..))...))))).)))).)))) ( -36.50)
>DroAna_CAF1 25715 118 + 1
AAGGAAAUUAUACUUAAAUUGGCUUUCAGCUUUAGCUCACGCAAGUGGAAAAUAUUUUCAUCUUCAUCAAGAUAUUUUUGUGUGUGCUGUAGAGGAGCUAGGUUCGAGUGGA--UGGAUG
..........((((..((((((((((...((.((((.((((((((..((((....))))(((((....)))))...)))))))).)))).)).))))))).)))..))))..--...... ( -30.40)
>consensus
AAGGAAAUUAUACUCAAAUUGGCUUUCAGCUUUGGCGCACGCAAGUGGAAAAUAUUUUCAUCUUCAUCAAGAUAUUUUUGUGUGUGCUUGAGUGGGGAUAAAGUGGAGUAGAGUUGCUUU
((((.((((.(((((...((...((((.((((.((((((((((((..((((....))))(((((....)))))...)))))))))))).)))).))))..))...))))).)))).)))) (-30.82 = -31.38 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:38 2006