Locus 5373

Sequence ID 3L_DroMel_CAF1
Location 14,782,206 – 14,782,322
Length 116
Max. P 0.644891
window8497

overview

Window 7

Location 14,782,206 – 14,782,322
Length 116
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 85.70
Mean single sequence MFE -30.82
Consensus MFE -22.46
Energy contribution -22.86
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.73
SVM decision value 0.23
SVM RNA-class probability 0.644891
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14782206 116 - 23771897
UGCUCGCACACCAUUUAAAUACAACUCGAGUGCAUACAGUAUUGCGCUUACUGUGCAGUGCACAGUGGUUCAGAGUCGGCGAAAUGUAAUUCAAAAAAUAUUAACGGG-G--CUCAAAA
.((((......(((((.....(.(((((((((((........)))))))(((((((...)))))))......)))).)...)))))((((.........))))...))-)--)...... ( -28.10)
>DroSec_CAF1 25207 116 - 1
UGCUCACACACCAUUUAAAUACAACUCGAGUGCAUACAGUUUUGCGCUUACUGUGCAGUGCACAGUGGUUCAGAGUCCGUGAAAUGUGCUUCAAAAAAUAUUAACGGG-U--CUCAAAA
.........(((...............(((((((........)))))))(((((((...))))))))))...((((((((..(((((..........))))).)))))-.--))).... ( -31.40)
>DroSim_CAF1 17437 116 - 1
UGCUCACACACCACUUAAAUACAACUCGAGUGCAUACAGUUUUGCGCUUACUGUGCAGCGCACAGUGGUUCAGAGUCCGUGAAAUGUGCUUCAAAAAAUAUUAACGGG-G--CUCAAAA
.........(((...............(((((((........)))))))(((((((...))))))))))...((((((((..(((((..........))))).)).))-)--))).... ( -31.40)
>DroEre_CAF1 24571 110 - 1
UGCUCACACACCAUUUAAAUACAGCUCGAGUGCAUACAGUUUUGCGCUUACUGUGCAGCGCACAGUGGCUCAGAGUCAGCGAAAAGUGCUCCUAAAGCGACUCAAAGCAG---------
((((..................((((.(((((((........)))))))(((((((...)))))))))))..(((((.((.....))(((.....))))))))..)))).--------- ( -33.30)
>DroYak_CAF1 25444 119 - 1
UGCUCACACACCAUUUAAAUACAGCUCGAGUGCAUACAGUUUUGCGCUUACUGUGCAGUGCACAGUGGGUCAGAGUCAACGAAAUGUGCUCCAAAAUAGAUUAAAGGAAGCUUUAAAUA
...........................(((..(((...((((((.(((((((((((...)))))))))))))))....))...)))..))).........((((((....))))))... ( -29.90)
>consensus
UGCUCACACACCAUUUAAAUACAACUCGAGUGCAUACAGUUUUGCGCUUACUGUGCAGUGCACAGUGGUUCAGAGUCAGCGAAAUGUGCUUCAAAAAAUAUUAACGGG_G__CUCAAAA
.((((....(((...............(((((((........)))))))(((((((...))))))))))...))))........................................... (-22.46 = -22.86 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:37 2006