Locus 5372

Sequence ID 3L_DroMel_CAF1
Location 14,781,627 – 14,781,738
Length 111
Max. P 0.555374
window8496

overview

Window 6

Location 14,781,627 – 14,781,738
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.05
Mean single sequence MFE -37.27
Consensus MFE -31.01
Energy contribution -31.77
Covariance contribution 0.75
Combinations/Pair 1.06
Mean z-score -1.74
Structure conservation index 0.83
SVM decision value 0.04
SVM RNA-class probability 0.555374
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14781627 111 - 23771897
CGAGGGUGAAGAACUGCAGACUGCAGUGGCUCUUCCUGCCGCCGCUGAAUUCUCAGCCGAGCACGUGGUGUGAAUGACAAAUUACACACGGCAGUCAGC---------AGAACAAGAACA
.............((((.((((((.(((((.......))))).(((((....)))))......((((.(((((........))))))))))))))).))---------)).......... ( -38.90)
>DroSec_CAF1 24564 111 - 1
CGAGGGUGAAGAACUGCAGACUGCAGUGGCUCUUCCUGCCGCCGCUGAAUUCUCAGCCGAGCACGUGGUGUGAAUGACAAAUUACACACGGCAGCCAGC---------AGAACAAGAACA
.(..((.((((((((((.....)))))...)))))(((((((((((((....)))).)).)).....((((((((.....))).))))))))))))..)---------............ ( -36.70)
>DroSim_CAF1 16737 111 - 1
CGAGGGUGAAGAACUGCAGACUGCAGUGGCUCUUCCUGCCGCCGCUGAAUUCUCAGCCGAGCACGUGGUGUGAAUGACAAAUUACACACGGCAGCCAGC---------GGAACAAGAACA
((..((.((((((((((.....)))))...)))))(((((((((((((....)))).)).)).....((((((((.....))).))))))))))))..)---------)........... ( -38.40)
>DroEre_CAF1 23862 111 - 1
CGGGGGUGAAGAACUGCAGACUGCAGUGGCUCUUCCUGCCGCCGCUGAAUUCUCAGCCGAGCACGUGGUGUGAAUGACAAAUUACACACGGCAGCCAGC---------GGAACAAGAACA
(((.((.((((((((((.....)))))...))))))).)))((((((....(((....)))...((.((((((((.....))).))))).))...))))---------)).......... ( -41.10)
>DroYak_CAF1 24783 111 - 1
CGAGGGUGAAGAACUGCAGACUGCAGUGGCUCUUCCUGCCGCCGCUGAAUUCUCAGCCGAGCACGUGGUGUGAAUGACAAAUUACACACGGCAGCCAGC---------AGAACAAGAACA
.(..((.((((((((((.....)))))...)))))(((((((((((((....)))).)).)).....((((((((.....))).))))))))))))..)---------............ ( -36.70)
>DroAna_CAF1 24298 113 - 1
--AUGCAGUACAACUGCAGACUGCAGUGGUUCUUCCUGCCGCUGC-----UCUUAGCCAAGCACGUGGUGUGAAUGACAAAUUACACACGGCAUCCAGAACAAGAACAAGAACAAGAACA
--.(((((.....)))))....((((((((.......))))))))-----((((.((...))..((.((((((((.....))).))))).)).........))))............... ( -31.80)
>consensus
CGAGGGUGAAGAACUGCAGACUGCAGUGGCUCUUCCUGCCGCCGCUGAAUUCUCAGCCGAGCACGUGGUGUGAAUGACAAAUUACACACGGCAGCCAGC_________AGAACAAGAACA
...((..((((((((((.....)))))...)))))(((((((((((((....)))).)).)).....((((((((.....))).))))))))))))........................ (-31.01 = -31.77 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:36 2006