Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,780,745 – 14,780,865 |
Length | 120 |
Max. P | 0.506791 |
Location | 14,780,745 – 14,780,865 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.33 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -21.12 |
Energy contribution | -20.80 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.19 |
Mean z-score | -1.40 |
Structure conservation index | 0.79 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14780745 120 + 23771897 CAUAAAAAUACAAAUUUUGCUGCGGGAUUUGUAGCUAGAUUGAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGCCAUUGCAAAAGUGAAUUUAAAAAUUCAAGGUUCAUGUAGCGCAAA ........(((((((((((...)))))))))))((((.((.((((((....(((...((((..(((......))))))).)))...((((((....)))))))))))))).))))..... ( -26.60) >DroSec_CAF1 23676 120 + 1 CAUAAAAAUACAAAUUUUGCUGCGGGAUUUGUAGCUAGAUUGAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGCCAUUGCAAAAGUGAAUUUAAAAAUUCAAGGUUCACGCAGCGCAAA ........(((((((((((...)))))))))))((((((.......))))..........(((((......((((....))))..((((((((.........)))))))))))))))... ( -26.60) >DroSim_CAF1 15845 120 + 1 CAUAAAAAUACAAAUUUUGCUGCGGGAUUUGUAGCUAGAUUGAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGCCAUUGCGAAAGUGAAUUUAAAAAUUCAAGGUUCACGCAGCGCAAA ..................((((((((((((((((((.(((..((((((.....)))....)))..))).))))))..(..(....)..).............)))))).))))))..... ( -27.80) >DroEre_CAF1 22979 120 + 1 CACAAAAACACAAAAUUUGUGGCGGGAUUUGUAGAUAGAUUGAACCUCUAAUUGAAAAGUGCUGCAUCGGGUUGCCAUUGCGAAAGUGAAUUUAAAAAUUCAAGGCUCACGUAGCGCAAA ...............((((((((((.((((...((((((.......))).)))...)))).))))..((....(((...((....))(((((....)))))..)))...))...)))))) ( -25.00) >DroYak_CAF1 23873 120 + 1 CAUAAAAAUACAAAUUUUGUUGCGGGAUUUGUAGAUAGAUUCAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGUCGUUGCGAAAGUGAAUUUCAAAAUUCAACGUUCGCGUAGCGCAAG ........(((((((((((...)))))))))))....(((.(((((((.....)))....)))).)))...(((.(((((((((..((((((....))))))...))))))..)))))). ( -27.50) >consensus CAUAAAAAUACAAAUUUUGCUGCGGGAUUUGUAGCUAGAUUGAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGCCAUUGCGAAAGUGAAUUUAAAAAUUCAAGGUUCACGUAGCGCAAA ........(((((((((((...)))))))))))..((((.......))))..........(((((......((((....))))..((((((((.........)))))))))))))..... (-21.12 = -20.80 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:31 2006