Locus 5369

Sequence ID 3L_DroMel_CAF1
Location 14,780,102 – 14,780,195
Length 93
Max. P 0.791229
window8490

overview

Window 0

Location 14,780,102 – 14,780,195
Length 93
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.43
Mean single sequence MFE -23.46
Consensus MFE -18.62
Energy contribution -18.82
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.79
SVM decision value 0.59
SVM RNA-class probability 0.791229
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14780102 93 + 23771897
-----------------------G---GUGGCAAAGUGGGAA-ACUGGGAAAAACUUUGGGGAAAACCGAGGAAUACAACAUAAUUGCAAUUUGCGUAAUUGUGCCCCUAAAGCUGAAUG
-----------------------.---..(((.....((...-.))(((.....((((((......)))))).......(((((((((.......))))))))).)))....)))..... ( -24.80)
>DroSec_CAF1 23029 93 + 1
-----------------------G---GUGGUAAAGUGGGAA-ACUGGGAAAAACUUUGGGGAAAACCGAGGAAUACAACAUAAUUGCAAUUUGCGUAAUUGUGCCCCUAAAGCUGAAUG
-----------------------(---((..((....((...-.))(((.....((((((......)))))).......(((((((((.......))))))))).)))))..)))..... ( -23.00)
>DroEre_CAF1 22321 93 + 1
-----------------------G---GUGGCAAAGUGGGAA-AGUGGGAAAAACUUUGGGGAAAACCGAGGAAUACAACAUAAUUGCAAUUUGCGUAAUUGUGCCCCUAAAGCUGAAUG
-----------------------.---..(((..((.(((..-...........((((((......)))))).......(((((((((.......))))))))))))))...)))..... ( -22.50)
>DroYak_CAF1 23199 89 + 1
-----------------------G--------AAAGUGGGAAAACUGGGAAAAACUUUGGGGAAAACCGAGGAAUACAACAUAAUUGCAAUUUGCGUAAUUGUGCCCCUAAAGCUGAAUG
-----------------------.--------..(((......)))(((.....((((((......)))))).......(((((((((.......))))))))).)))............ ( -20.10)
>DroAna_CAF1 22905 119 + 1
UUCGGGGAUUUUGGGGCAUGGUGAGAAGUAGGGGGAUGAAAA-ACUGGGAAAAACUUUGGGGAAAACCGAGGAAUACAACAUAAUUGCAAUUUGCGUAAUUUUGCCCCUAAAGCUGAAUG
(((((...(((.((((((..((.....(((((..(.......-...........((((((......)))))).......((....)))..)))))...))..)))))).))).))))).. ( -26.90)
>consensus
_______________________G___GUGGCAAAGUGGGAA_ACUGGGAAAAACUUUGGGGAAAACCGAGGAAUACAACAUAAUUGCAAUUUGCGUAAUUGUGCCCCUAAAGCUGAAUG
..............................................(((.....((((((......)))))).......(((((((((.......))))))))).)))............ (-18.62 = -18.82 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:30 2006