Locus 5366

Sequence ID 3L_DroMel_CAF1
Location 14,776,899 – 14,776,997
Length 98
Max. P 0.683285
window8479

overview

Window 9

Location 14,776,899 – 14,776,997
Length 98
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 72.28
Mean single sequence MFE -15.52
Consensus MFE -1.62
Energy contribution -2.34
Covariance contribution 0.72
Combinations/Pair 1.20
Mean z-score -1.60
Structure conservation index 0.10
SVM decision value 0.31
SVM RNA-class probability 0.683285
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14776899 98 + 23771897
ACGUAUUAAAAUCCAGCUAAAAAAAGGGCUGGCCGUCAAAAAAAUA--AAAUAGAAAGGAAAUGGGA----ACGG-------------CAGGGGAGAAAAUGCGAUGAAGGCUUUGU
.((((((....(((((((........)))).(((((..........--...................----))))-------------)...)))...))))))............. ( -17.95)
>DroSec_CAF1 19765 100 + 1
ACGUAUUAAAAUCCUGCUAAAAAAAGGGUUGGCCGUCAAAAAAAAAAGAAAUAGAAAGGAAAUGGGA----ACGG-------------CAGGGGAGAAAAUGCGAUGAAGACUUUGU
.((((((....(((((((........((....)).............................(...----.)))-------------))))).....))))))............. ( -18.30)
>DroEre_CAF1 19218 100 + 1
ACGUAUUAAAAUCCUGCAAAA--AAAGGCUGGCCGUCAAAAAAAUA--AAAGAGAAAGGAAAUGGGAUGGGAUGG-------------CAGGAGGGAAAAUGCGAUGAAGGCUUUGU
.((((((....((((((....--....))..((((((.........--......................)))))-------------))))).....))))))............. ( -17.68)
>DroYak_CAF1 19903 95 + 1
ACGUAUUAAAAUCCUGCAAAAA-AAAGGCUGGCCGUCAAAAAAAUA--AAAUAAAAAGGAAAUACGGUGG------------------C-GGGGGGAAAAUGCGAUGAAGGCUUUGU
.((((((....((((((.....-...((....))............--.........(......)....)------------------)-))))....))))))............. ( -16.60)
>DroAna_CAF1 19301 104 + 1
GCCCAUUUAAAUCUU-CAAAAA-AA---CUAACC---AAAAAAA-CUUAAAUUUAAAAAAAAACGGA----AUGAGCGAAUCUCUCAAAAAAAAAUAAAAUUCCAUGAAGGCUUUGU
(((..(((((((...-......-..---......---.......-.....))))))).......(((----(((((.......)))).............)))).....)))..... (  -7.06)
>consensus
ACGUAUUAAAAUCCUGCAAAAA_AAAGGCUGGCCGUCAAAAAAAUA__AAAUAGAAAGGAAAUGGGA____ACGG_____________CAGGGGAGAAAAUGCGAUGAAGGCUUUGU
........................((((((...((((..................................................................))))..)))))).. ( -1.62 =  -2.34 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:20 2006