Locus 5364

Sequence ID 3L_DroMel_CAF1
Location 14,775,635 – 14,775,725
Length 90
Max. P 0.665082
window8475

overview

Window 5

Location 14,775,635 – 14,775,725
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 95.93
Mean single sequence MFE -14.43
Consensus MFE -11.67
Energy contribution -12.23
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.31
Structure conservation index 0.81
SVM decision value 0.28
SVM RNA-class probability 0.665082
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14775635 90 + 23771897
AAAAAAGUUUCUGCUUUUCCAAAUCUCUGCACAAGUUGAUAAACAACAUCAAAGAGACAUAAACACAAAAAGAGCAAAACUGAGACGCAG
......((((((((((((.....(((((......((((.....)))).....)))))............))))))).....))))).... ( -13.83)
>DroSec_CAF1 18572 90 + 1
AAAAAAGUUUCUGCUUUUCCAAAUCUCUGCACAAGUUGAUAAACAACAUCAAAGAGACAUAAACACAAAAAGAGCAAAACUGAGACGCAG
......((((((((((((.....(((((......((((.....)))).....)))))............))))))).....))))).... ( -13.83)
>DroEre_CAF1 18021 90 + 1
AAAAAAGUUUCUGCUCUUCCAAAUCUCUGCACAAGUUGAUAAACAACAUCAAAGAGACAUAAACACAAAAAGAGCAAAACUGAGACUCAG
.....(((((((((((((.....(((((......((((.....)))).....)))))............))))))).....))))))... ( -16.53)
>DroYak_CAF1 18612 89 + 1
AAAAAAGUUGCUUCUUUUCCAAAUCUCUGCACAAGUUGAUAAACAACAUCAAAGAGACAUAAACACAAAAAGAGCAG-ACUGAGUCUCAG
.......(((((..((((.....(((((......((((.....)))).....))))).........))))..)))))-.(((.....))) ( -13.54)
>consensus
AAAAAAGUUUCUGCUUUUCCAAAUCUCUGCACAAGUUGAUAAACAACAUCAAAGAGACAUAAACACAAAAAGAGCAAAACUGAGACGCAG
.....(((((.(((((((.....(((((......((((.....)))).....)))))............))))))))))))......... (-11.67 = -12.23 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:16 2006