Locus 5363

Sequence ID 3L_DroMel_CAF1
Location 14,775,058 – 14,775,157
Length 99
Max. P 0.995623
window8474

overview

Window 4

Location 14,775,058 – 14,775,157
Length 99
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 77.56
Mean single sequence MFE -36.33
Consensus MFE -20.13
Energy contribution -22.30
Covariance contribution 2.17
Combinations/Pair 1.00
Mean z-score -3.46
Structure conservation index 0.55
SVM decision value 2.60
SVM RNA-class probability 0.995623
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14775058 99 - 23771897
UUCAAAGCUCAAAGGCGGCCAAGUGCCAGUGAUUCUGAUUCUGAUUCAGAUUCUGAUUCAGAUUCGGGCGCUGGCUAUGGCUGC---GGAUCUAAAUGGCAA
......(((...(((((((((...(((((((...((((.(((((.((((...)))).))))).)))).)))))))..)))))))---....))....))).. ( -41.80)
>DroSec_CAF1 18014 102 - 1
UUCAAAGCUCAAAGGCGGCCAAGUGCCUGUGAUUCUGAUUCAGAUUCAGAUUCUGAUUCAGAUUCGGGCGCUUGCUAUGGCUGCGGCGGAUCUAAAUGGCAA
.((...(((.....(((((((((((((((....(((((.(((((.......))))).)))))..)))))))).....)))))))))).))............ ( -39.80)
>DroEre_CAF1 17547 75 - 1
UUCAAAGCUCAAAGGCGGCCAAGUGCCUGUGAUUCGGACUCGGAUUCA------GAUUCAGAUUCGGGCG---------------------CUGAAUGGCCA
......(((....)))(((((((((((((.(((..(((.((.......------)))))..)))))))))---------------------))...))))). ( -27.40)
>consensus
UUCAAAGCUCAAAGGCGGCCAAGUGCCUGUGAUUCUGAUUCAGAUUCAGAUUCUGAUUCAGAUUCGGGCGCU_GCUAUGGCUGC___GGAUCUAAAUGGCAA
......(((....))).((((((((((((....(((((.((.((.......)).)).)))))..)))))))).((....))...............)))).. (-20.13 = -22.30 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:15 2006