Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,774,866 – 14,774,978 |
Length | 112 |
Max. P | 0.934850 |
Location | 14,774,866 – 14,774,978 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -31.10 |
Consensus MFE | -20.46 |
Energy contribution | -20.65 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.19 |
Mean z-score | -2.24 |
Structure conservation index | 0.66 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14774866 112 + 23771897 UUCAUAUUUUUGGCACAAUUUAUGGCCCCCUUUUUUUUUGCCAGUGAGCCAUCAAGAAGUGAGCAGAAAAGAGUCUUGGGCCAAGUCGAAGGGUUCUUUUUUGUGGGUUUCC .((((.((((((((.((.....((((.............)))).)).))))..)))).))))((((((((((..(((.(((...)))..)))..))))))))))........ ( -29.52) >DroSec_CAF1 17826 108 + 1 UUGAUAUU-UUGGCACAACUUAUGGC---AUUUUUUUUUGUCAGUGUGCCAUCAAGAAGUGAGCAGAAAAGAGUCUUGGGCCAAGUCGAAGGGAUCUUUUUUGUGGGUUUCC ((((....-.(((((((.....((((---(........))))).)))))))))))((((...((((((((((.((((.(((...))).))))..))))))))))...)))). ( -34.20) >DroEre_CAF1 17375 92 + 1 ----------------AGUUUAUGGC---ACGCUUUUUUCUCAGUGAGCCAUCAAGAAGUGAGCAGAACAGAGUCUUGG-CCAAGUCGCAGGAUUCUUUUUUGUGGGCUUCC ----------------.....(((((---.((((........)))).)))))...(((((..((((((.(((((((((.-(......)))))))))).))))))..))))). ( -32.10) >DroYak_CAF1 17845 93 + 1 ----------------AAUUUAUGGC---ACACUUUUUUGUCAGUGAGCCAUCAAGAAGUGAGCAGAAAAGAGUCUUGGACCAAGUCGAAGGGUUCUUUUUUGUGGGUUUCC ----------------.....(((((---.((((........)))).)))))...((((...((((((((((..(((.(((...)))..)))..))))))))))...)))). ( -28.60) >consensus ________________AAUUUAUGGC___ACUCUUUUUUGUCAGUGAGCCAUCAAGAAGUGAGCAGAAAAGAGUCUUGGGCCAAGUCGAAGGGUUCUUUUUUGUGGGUUUCC .....................(((((....((((........)))).)))))...(((((..(((((((((((((((.(((...)))..)))))))))))))))..))))). (-20.46 = -20.65 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:14 2006