Locus 5361

Sequence ID 3L_DroMel_CAF1
Location 14,774,066 – 14,774,166
Length 100
Max. P 0.782912
window8472

overview

Window 2

Location 14,774,066 – 14,774,166
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 95.33
Mean single sequence MFE -23.27
Consensus MFE -23.12
Energy contribution -22.90
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.63
Structure conservation index 0.99
SVM decision value 0.56
SVM RNA-class probability 0.782912
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14774066 100 + 23771897
AAGUUGAGAAUGAGAAUGGGAUUGAGAAUGAGCUGGGGGGCCAGGCACCAAGAUGGCAAACAACUGAGGUUGCAAUAAAUCCCCGGCAAGACAAGCAAAA
...............................((((((((.....(((((.((.((.....)).))..)).)))......))))))))............. ( -23.90)
>DroSec_CAF1 17018 100 + 1
AAGUUGAGAAUGAGAAUGGGAAUGGGAAUGAGCUGGGGGGCCAGGCACCAAGAUGGCAAACAACUGAGGUUGCAAUAAAUCCCCGGCAAGACAAGCAAAA
...............................((((((((.....(((((.((.((.....)).))..)).)))......))))))))............. ( -23.90)
>DroYak_CAF1 17111 100 + 1
AAGUUGAGAAUGAGAUUGAGAAUGAGAAUGAGCUGGGGGCCAAGGCACUAAGAUGGCAAACAACUGAGGUUGCAAUAAAUCCCCGGCAAGACAAGCAAAA
...............................(((((((((((...........))))...((((....))))........)))))))............. ( -22.00)
>consensus
AAGUUGAGAAUGAGAAUGGGAAUGAGAAUGAGCUGGGGGGCCAGGCACCAAGAUGGCAAACAACUGAGGUUGCAAUAAAUCCCCGGCAAGACAAGCAAAA
...............................((((((((.....(((((.((.((.....)).))..)).)))......))))))))............. (-23.12 = -22.90 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:13 2006