Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,772,742 – 14,772,860 |
Length | 118 |
Max. P | 0.666952 |
Location | 14,772,742 – 14,772,860 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -22.69 |
Consensus MFE | -15.63 |
Energy contribution | -16.07 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.28 |
Mean z-score | -1.89 |
Structure conservation index | 0.69 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14772742 118 + 23771897 UUUGCUGAAAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCAAAUGAGAAGCAU-UCGAUUCAAUUUGAUCGAAAGGCAGCAAUCGCAUUGAAUAAAUAAAUA-GUAAGUGCAGUAAA .((((((................(((((((((((((((...((....)).))))))-..)))))))))...((....))))))))..(((((...((......))-...)))))...... ( -26.50) >DroSec_CAF1 15734 118 + 1 UUUGCUGAAAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCAAAUGUGAAGCAU-UCGAUUAAAUUUGAUCGCAAGGCAGCAAUCGCAUUGAAUAAAUAAAUA-GUAAUAGCAGUAAA .((((((.........((((..(((((((...((((((....(....)..))))))-)))))))..)))).((....))))))))..((((((............-.)))).))...... ( -19.32) >DroEre_CAF1 15396 119 + 1 UUUGCUGAAAAUUAAACGGAAAUAAUUGCAUUAUGCUUAAAUCAAAUGAGAAGCAUUUCAGUUGAAUUUGAACAAAAGGCAACAAUCGCAUAGUAUAAAUAAAUAUCCGAGCGCAGGGA- ((((((....).....((((..((.(((.((((((((((((((((.(((((....))))).))).))))))......(....)....))))))).))).))....))))...)))))..- ( -21.00) >DroYak_CAF1 15779 120 + 1 UUUGCUGAAAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCGAAUGAGAAGCGUUUCAAUUGAAUUUGAUCAAAAGGCAGCAAUCGCAUUGAAUAAAUAAAUAUGCGAGCGCUGUGAA ................((((..((((((((..((((((...((....)).))))))))))))))..))))........(((((..((((((.............))))))..)))))... ( -27.72) >DroAna_CAF1 15554 117 + 1 UUUGUUGAGAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCAAAUGAGAACCUU-UCAAUUCAAUCCAAUCGAAAGUCAACAAGCACAUUGAAUAAAUAAAUAUGA--GAGCGGAGCA .(((((((.........(((...(((((((.....((((.......)))).....)-))))))...)))...(....))))))))((.(.((..(((......)))..--))...).)). ( -18.90) >consensus UUUGCUGAAAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCAAAUGAGAAGCAU_UCAAUUCAAUUUGAUCGAAAGGCAGCAAUCGCAUUGAAUAAAUAAAUAUGCAAGAGCAGUGAA .((((((.........((((..(((((((...((((((...((....)).)))))).)))))))..)))).........))))))................................... (-15.63 = -16.07 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:12 2006