| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,565,073 – 1,565,177 |
| Length | 104 |
| Max. P | 0.956034 |
| Location | 1,565,073 – 1,565,177 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.38 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.40 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1565073 104 - 23771897 CAAUUUCGGGCCAAUGCCAA------AU----AGCCCCUCCUGCGAUCUGUACACCUAGAA---CUUGGCCAUAAACAAUCUAUCUUGAUUUGUGCCACACUUUUGGGAGGGGCA--UA ........(((....)))..------..----.(((((((((....((((......)))).---..((((.((((((((......))).))))))))).......))))))))).--.. ( -33.30) >DroSec_CAF1 9571 108 - 1 CAAUUUCGGGCCAAUGCCAA------AUUGCUAGUCCCUCCUGCGAUCUGCGCACCUAGAACCACUUGGCCAUAAACAAUCUAUCUUGAUUUGUGCCAC-CUUUUG----GGGCAUUUA ........(((((((((((.------(((((.((......))))))).)).)))...........))))))......((((......)))).(((((.(-(....)----))))))... ( -27.40) >DroSim_CAF1 9866 104 - 1 CAAUUUCGGGCCAAUGCCAA------AU----AGCCCCUCCUGCGAUCUGCACACCUAGAACCACUUGGCCAUAAACAAUCUAUCUUGAUUUGUGCCAC-CUUUUG----GGGCAUUUA ........(((....)))..------..----.(((((...(((.....)))..............((((.((((((((......))).))))))))).-.....)----))))..... ( -24.30) >DroEre_CAF1 15698 83 - 1 CAGUUUGGGGCCAAUGCCAA------AU----AGCCCC----------------CCUAGAA---CUUGGCCAUAAACAAUCUUUCCUGAUUUGUUGCUG-UUUUGG----GGGCC--CA .....((((((....)))..------..----.(((((----------------(..((((---(..(((.(((((((........)).))))).))))-))))))----)))))--)) ( -25.70) >DroYak_CAF1 9737 95 - 1 CAGUUUGGGGCCAAUGCCAAUCCCGGGU----AGCCCCUCUUUCGAUCUGCACACCUAGAA---CUUGGCCAUAAACCAUCUAUCUUGAUUUGU-----------G----UGGCC--CA .......((((((..(((((....(((.----...)))........((((......)))).---.)))))((((((.((.......)).)))))-----------)----)))))--). ( -26.90) >consensus CAAUUUCGGGCCAAUGCCAA______AU____AGCCCCUCCUGCGAUCUGCACACCUAGAA___CUUGGCCAUAAACAAUCUAUCUUGAUUUGUGCCAC_CUUUUG____GGGCA__UA ........(((....)))...............((((.................((.((.....)).))......((((((......)).))))................))))..... (-11.14 = -11.38 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:36 2006