| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,766,938 – 14,767,048 |
| Length | 110 |
| Max. P | 0.521008 |
| Location | 14,766,938 – 14,767,048 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.61 |
| Mean single sequence MFE | -36.04 |
| Consensus MFE | -25.58 |
| Energy contribution | -27.00 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14766938 110 + 23771897 ACUGGGGGUGUAGGUAUAGGGGAUGCCCUUCUCCUCGCAGACGGCUGGUAAGUGGCACAUGAUGUCCACAGGUGUAACGUCGCCAGCAAAGAUGCAAAUGCUG---------GAGAAGA- .(((...(((.(((...((((....))))...))))))...)))(..(((.((((.((.....)))))).((((......)))).(((....)))...)))..---------)......- ( -34.10) >DroVir_CAF1 12919 109 + 1 ACUGGGCGUGUAGGCGUAGGGAAUGCCCUUCUCCUCGCAAACAGCGGGCAGGUGGCACAUAAUGUCCACAGGUGUCACAUCGCCGGCAAAGAUGCAGAUGCUGUG-----------AGUG (((....(((.(((.(.((((....)))).).))))))..(((((((((..(((((((....((....)).)))))))...))).(((....)))...)))))).-----------))). ( -39.70) >DroPse_CAF1 11340 119 + 1 ACUCGGGGUGUAGGCAUAGGGAAUGCCCUUCUCCUCGCAGACGGCAGGCAGAUGGCACAUGAUGUCCACAGGUGUCACAUCGCCAGCAAAGAUGCAAAUGCUGUGGAGGAGGAAGAAGA- ............(((((.....)))))(((((((((.(..(((((((((.((((..((((..((....)).))))..))))))).(((....)))...)))))).)..)))).))))).- ( -41.50) >DroGri_CAF1 10730 108 + 1 GCUUGGCGUGUAGGUGUAGGGAAUGCCCUUCUCCUCGCAAACGGCGGGUAGGUGGCACAUUAUGUCCACAGGUGUCACAUCGCCAGCAAAAAUGCAAAUGCUGUC-----------AGA- ..((((((((.(((.(.((((....)))).).))))))....(((((....(((((((....((....)).))))))).))))).(((....))).......)))-----------)).- ( -39.40) >DroWil_CAF1 15219 113 + 1 ACUUGGCGUAUAGGCAUAGGGAAUACCCUUUUCCUCGCAAACGGCAGGCAAAUGACACAUUAUGUCCACCGGCGUAACAUCACCAGCAAAUAUGCAGAGUCUGUUG------GCGAACA- .....(((...(((...((((....))))...))))))...((((((((...(((....(((((((....)))))))..)))...(((....)))...))))))))------.......- ( -29.90) >DroAna_CAF1 9454 115 + 1 GCUCGGCGUGUAGGCAUAGGGAAUUCCCUUCUCUUCACAAACAGCCGGCAAGUGGCACAUAAUCUCCACGGGAGUCACAUCGCCAGCAAAGAUGCAAAUUCUAUUCCA----GAAAAGA- ((.((((.((((((...((((....))))...))).)))....))))))...((((.......((((...)))).......))))(((....)))...((((.....)----)))....- ( -31.64) >consensus ACUCGGCGUGUAGGCAUAGGGAAUGCCCUUCUCCUCGCAAACGGCAGGCAAGUGGCACAUAAUGUCCACAGGUGUCACAUCGCCAGCAAAGAUGCAAAUGCUGUG_______GAGAAGA_ .......(((.(((...((((....))))...))))))..(((((.(((..(((((((....((....)).)))))))...))).(((....)))....)))))................ (-25.58 = -27.00 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:04 2006