Locus 5353

Sequence ID 3L_DroMel_CAF1
Location 14,766,426 – 14,766,524
Length 98
Max. P 0.745323
window8462

overview

Window 2

Location 14,766,426 – 14,766,524
Length 98
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 71.89
Mean single sequence MFE -15.17
Consensus MFE -7.50
Energy contribution -7.62
Covariance contribution 0.11
Combinations/Pair 1.07
Mean z-score -2.16
Structure conservation index 0.49
SVM decision value 0.46
SVM RNA-class probability 0.745323
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14766426 98 + 23771897
G-------U------------GUCACUCCAUCUUAACUGGUUUCGAAAUUACU-GUCUUGCAAUUAUCCAUUUCCAUAUCAGCAGUUUUGAAACUAU--CUCUAUUAACAAAACUAACAA
.-------.------------................(((((((((((((.((-(...((.((........)).))...))).))))))))))))).--..................... ( -15.40)
>DroSim_CAF1 9475 86 + 1
G-------U------------GUCAUUCCAUCUUAACUGGUUUCGAAAUUACU---------------CAUUUCCAUAUCAGCAGUUUUGAAACUAUCUCUCUAUUAACAAAACUAACAA
.-------.------------................(((((((((((((.((---------------.((......)).)).)))))))))))))........................ ( -12.00)
>DroYak_CAF1 9241 118 + 1
GAAAACUGUUUUAAGCCAACAAUCUUUCCAUCUUAACUGAUUUCGAAAUUACAUGGCUUGAAAUUGUCCAUUUCCAUACCAGCGGUUUUGAAACUAU--CUCUAUUAACCCAACUAACAG
((((((.(((((((((((......((((.(((......)))...)))).....))))))))))).))...)))).......(.((((..((......--.))....)))))......... ( -18.10)
>consensus
G_______U____________GUCAUUCCAUCUUAACUGGUUUCGAAAUUACU_G_CUUG_AAUU_UCCAUUUCCAUAUCAGCAGUUUUGAAACUAU__CUCUAUUAACAAAACUAACAA
.....................................(((((((((((((.(.............................).)))))))))))))........................ ( -7.50 =  -7.62 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:03 2006