Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,764,912 – 14,765,036 |
Length | 124 |
Max. P | 0.638172 |
Location | 14,764,912 – 14,765,022 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -46.02 |
Consensus MFE | -31.98 |
Energy contribution | -34.74 |
Covariance contribution | 2.76 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.69 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14764912 110 - 23771897 AGAGCAACCCGUUGGAUGCUGGG-AGCCACAUGGGCGGCGCCUGAGGCGCCCUUGGGGGCGUGGCAGAGGUGUAACAGGUGGAGCGGGGGAUGGCGCUGUUUGUGGGCAAG-------- ..((((.((....)).))))...-.(((.(((..((((((((((..((((((....))))))..))....(((..(....)..)))......))))))))..))))))...-------- ( -47.90) >DroSec_CAF1 7836 110 - 1 AGAGCAACCCGUUGGAUGCUGGGAAGCCACAUGGGCGGCGCCUGAGGCGCCCUUGGGGGCGUGGCAGAGGGGUGACAGGUGGAGCGGGAG-UCGCGCUGUUUGUGGGCAAG-------- ..((((.((....)).)))).....(((.(((..((((((((((..((((((....))))))..)))...(....).....((.(....)-)))))))))..))))))...-------- ( -48.80) >DroSim_CAF1 7972 110 - 1 AGAGCAACCCGUAGGAUGCUGGGAAGCCACAUGGGCGGCGCCUGAGGCGCCCUUGGGGGCGUGGCAGAGGGGUAACAGGUGGAGCGGGAG-UCGCGCUGCUUGUGGGCAAG-------- ..((((.((....)).)))).....(((.((..(((((((((((..((((((....))))))..)))..............((.(....)-))))))))))..)))))...-------- ( -50.40) >DroEre_CAF1 7735 106 - 1 AGAGCAACCCGUUGGAUGCUGGG-AGCCACGUGGGCGGCGCCUGAGGCGGCCUUGGGGGCGUGGCAGAGGGCUAACAGG--GGGCGGG----------GCUGGAGGGCAAGGGUAAAUG ...((..(((((....(.(((..-((((.(....((.((((((((((...))))..)))))).))...)))))..))).--).)))))----------(((....)))....))..... ( -40.90) >DroYak_CAF1 7748 107 - 1 AGAGCAACCCGUUGGAUGCUGGG-AGCCACGUGGGCGACGCCUCUGGCGGCCUUGGGGGCGUGGCAGAUGGUUAACAGGG-GGGCGGG----------GCUGGAGGGCAAGGGUGAAAG ...((..((((((...(.(((..-((((((....((.(((((((..(.....)..))))))).)).).)))))..))).)-.))))))----------(((....)))....))..... ( -42.10) >consensus AGAGCAACCCGUUGGAUGCUGGG_AGCCACAUGGGCGGCGCCUGAGGCGCCCUUGGGGGCGUGGCAGAGGGGUAACAGGUGGAGCGGG_G_U_GCGCUGCUUGUGGGCAAG________ ..((((.((....)).)))).....(((.(((..((((((((((..((((((....))))))..)))..(.....).................)))))))..))))))........... (-31.98 = -34.74 + 2.76)
Location | 14,764,944 – 14,765,036 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.46 |
Mean single sequence MFE | -31.59 |
Consensus MFE | -23.74 |
Energy contribution | -24.37 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.16 |
Mean z-score | -1.72 |
Structure conservation index | 0.75 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14764944 92 + 23771897 CCUGUUACACCUCUGCCACGCCCCCAAGGGCGCCUCAGGCGCCGCCCAUGUGGCU-CCCAGCAUCCAACGGGUUGCUCUGAGCAGCCC----AGAAA ...........(((((..(((((....))))).....((.(((((....))))).-))..)).......(((((((.....)))))))----))).. ( -34.40) >DroSec_CAF1 7867 93 + 1 CCUGUCACCCCUCUGCCACGCCCCCAAGGGCGCCUCAGGCGCCGCCCAUGUGGCUUCCCAGCAUCCAACGGGUUGCUCUGAGCAGCCC----AGAAA .(((..........(((.(((((....))))).....)))(((((....)))))....)))........(((((((.....)))))))----..... ( -34.00) >DroSim_CAF1 8003 93 + 1 CCUGUUACCCCUCUGCCACGCCCCCAAGGGCGCCUCAGGCGCCGCCCAUGUGGCUUCCCAGCAUCCUACGGGUUGCUCUGAGCAGCCC----AGAAA ..((((........(((.(((((....))))).....)))(((((....))))).....))))......(((((((.....)))))))----..... ( -34.10) >DroEre_CAF1 7763 92 + 1 CCUGUUAGCCCUCUGCCACGCCCCCAAGGCCGCCUCAGGCGCCGCCCACGUGGCU-CCCAGCAUCCAACGGGUUGCUCUGAGCAGCCC----AGAAA .......((.....((((((.......(((.(((...)))))).....)))))).-....)).......(((((((.....)))))))----..... ( -33.90) >DroYak_CAF1 7777 92 + 1 CCUGUUAACCAUCUGCCACGCCCCCAAGGCCGCCAGAGGCGUCGCCCACGUGGCU-CCCAGCAUCCAACGGGUUGCUCUGAGCAGCCC----AGAAA ...........(((((((((((.....)))((((...))))........))))).-.............(((((((.....)))))))----))).. ( -31.40) >DroPer_CAF1 11574 86 + 1 CCCGAUAGUC---------CCCUCCAAGUACGCCACAGGCGCCAUUUAU-CGGCU-CGCAGCAUCCAAAGGGUUGCUCUGAGCAGCCUUACAAAAAA ..((((((..---------...........((((...))))....))))-))(((-((.((((.((....)).)))).))))).............. ( -21.73) >consensus CCUGUUACCCCUCUGCCACGCCCCCAAGGGCGCCUCAGGCGCCGCCCAUGUGGCU_CCCAGCAUCCAACGGGUUGCUCUGAGCAGCCC____AGAAA ..............((((((.......((.((((...)))))).....))))))...............(((((((.....)))))))......... (-23.74 = -24.37 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:02 2006