Locus 5350

Sequence ID 3L_DroMel_CAF1
Location 14,763,239 – 14,763,334
Length 95
Max. P 0.530390
window8458

overview

Window 8

Location 14,763,239 – 14,763,334
Length 95
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 76.49
Mean single sequence MFE -39.90
Consensus MFE -25.23
Energy contribution -24.33
Covariance contribution -0.90
Combinations/Pair 1.38
Mean z-score -1.23
Structure conservation index 0.63
SVM decision value -0.01
SVM RNA-class probability 0.530390
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14763239 95 - 23771897
UCCAGCGGCGGUGAAGCAUCUACAGAUUGCUGUGGGGGCUGCUGCUGCUGUUGCUGUUGACCCUGUGGAUACAUCAUGGGAUACUGUGGUCGCUG-----------
..((((((((((..(((..((((((....))))))..)))))))))))))(..(.((...(((((((....)).)).)))..)).)..)......----------- ( -36.90)
>DroPse_CAF1 7533 100 - 1
UCCAGCGGCGGCGAGGCCUCCACGGACUGUGGCUGGAGCGG------CUGCUGCGGCUGGUUCUGGGGAUACAUCAUGGGAUACUGCGGCCUCUGGCCCUGGCCGC
.((((.(((.(.((((((((((.(((((..(((((.(((..------..))).)))))))))))))).....(((....))).....))))))).))))))).... ( -44.60)
>DroSec_CAF1 6135 89 - 1
UCCAGCGGCGGUGAAGCAUCUACAGAUUGCUGUGGAGGCUGCUG------CUGCUGUUGACCCUGUGGAUACAUCAUGGGAUACUGCGGUCGCUG-----------
..((((((((((..(((.(((((((....))))))).)))))))------))))))..(((((.(((....(.....)...))).).))))....----------- ( -36.50)
>DroSim_CAF1 6265 95 - 1
UCCAGCGGCGGUGAAGCAUCUACAGAUUGCUGUGGAGGCUGCUGCUGCUGCUGCUGUUGACCCUGUGGAUACAUCAUGGGAUACUGUGGUCGCUG-----------
..((((((((((..(((.(((((((....))))))).)))))))))))))(..(.((...(((((((....)).)).)))..)).)..)......----------- ( -38.40)
>DroEre_CAF1 6025 89 - 1
UCCAGCGGCGGUGAAGCAUCCACAGAUUGCUGUGGCGGCUG------CUGCUGCUGUUGACCUUGUGGAUACAUCAUGGGGUACUGAGGUCGCUG-----------
..((((((((((..(((..((((((....))))))..))))------)))))))))..((((((..((.(((........)))))))))))....----------- ( -38.40)
>DroPer_CAF1 9537 100 - 1
UCCAGCGGCGGCGAGGCCUCCACGGACUGUGGCUGGAGCGG------CUGCUGCGGCUGGUUCUGGGGAUACAUCAUGGGAUACUGCGGCCUCUGGCCCUGGCCGC
.((((.(((.(.((((((((((.(((((..(((((.(((..------..))).)))))))))))))).....(((....))).....))))))).))))))).... ( -44.60)
>consensus
UCCAGCGGCGGUGAAGCAUCCACAGAUUGCUGUGGGGGCUG______CUGCUGCUGUUGACCCUGUGGAUACAUCAUGGGAUACUGCGGUCGCUG___________
..(((((((.((((.(.((((((((....(.((((.(((.((....)).))).)))).)...)))))))).).))..((....)))).)))))))........... (-25.23 = -24.33 +  -0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:00 2006