Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,762,735 – 14,762,836 |
Length | 101 |
Max. P | 0.835839 |
Location | 14,762,735 – 14,762,836 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 81.62 |
Mean single sequence MFE | -47.16 |
Consensus MFE | -32.80 |
Energy contribution | -34.68 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.18 |
Mean z-score | -1.96 |
Structure conservation index | 0.70 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14762735 101 - 23771897 AUGGGUCCGUUCGGCACACUGCUGCCCCUCUGCAUAC------CCAUCGGCGGUGCCUGCGGCUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGGUCCGGGUCCAUA ((((..(((.((((..((((((((((((((.((((.(------(....))..))))..(((((....))))))).)).))))))))))...))))..)))..)))). ( -51.90) >DroSec_CAF1 5634 101 - 1 AUGGGUCCGUUUGGCACACUGCUGCCCCUCUGCAUAC------CCAUCGGCGGUGCCUGCGGCUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGGUCCGGGUCCAUA ((((..(((...((..((((((((((((((.((((.(------(....))..))))..(((((....))))))).)).))))))))))..)).....)))..)))). ( -51.00) >DroSim_CAF1 5761 101 - 1 AUGGGUCCGUUUGGCACACUGCUGCCCCUCUGCAUAC------CCAUCGGCGGUGCCUGCGGCUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGNNNNNNNNNNNNN ............(((.((((((((((((((.((((.(------(....))..))))..(((((....))))))).)).)))))))))))))................ ( -38.40) >DroEre_CAF1 5521 101 - 1 AUGGGUCCGUUCGGCACACUGCUGCCCCUCUGCAUUC------CCAUCGGCGGUGGCUGCUGUUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGGGCCGGGUCCAUA ((((..((((((((..((((((((((((..((((.(.------.((.((((((...)))))).))..).))))..)).))))))))))...))))).)))..)))). ( -53.10) >DroAna_CAF1 5179 101 - 1 AUCGGUCCAUUGGGCACACUGCUCCCCCGCUGCAUUCCACCGCCCAUCGGCUGCGCCUGUUGCUGCUGCUGCGAUGGGUUGGGUGGCGGCCCUAGGC------CAUA ...((((....((((....(((.........)))..(((((((((((((((.((((.....)).)).))..))))))))..)))))..))))..)))------)... ( -41.40) >consensus AUGGGUCCGUUCGGCACACUGCUGCCCCUCUGCAUAC______CCAUCGGCGGUGCCUGCGGCUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGGGCCGGGUCCAUA ((((..(((...(((.((((((((((((..((((..........((.((((.((....)).)))).)).))))..)).)))))))))))))......)))..)))). (-32.80 = -34.68 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:59 2006