Locus 5348

Sequence ID 3L_DroMel_CAF1
Location 14,762,328 – 14,762,421
Length 93
Max. P 0.728680
window8456

overview

Window 6

Location 14,762,328 – 14,762,421
Length 93
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 63.08
Mean single sequence MFE -47.73
Consensus MFE -19.05
Energy contribution -23.18
Covariance contribution 4.13
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.40
SVM decision value 0.42
SVM RNA-class probability 0.728680
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14762328 93 - 23771897
GUCCUGGGCCUUGAUUCUGUCC---------CUGCUGCGGU---------GGUCGCCAGUGCUGCAUGGCUGGAUAUUGUCCGUAUGG---UGGCGGUGGACCCCCGCCGCCAC
.....((((....((((.(.((---------.(((.(((.(---------((...))).))).))).))).))))...)))).....(---(((((((((....)))))))))) ( -41.80)
>DroPse_CAF1 6579 102 - 1
GCCCUUGUCCUUGGCCCUGUCCGCCCGGCUGCUGCUGCGGUGCAAUGGGCGGACGCCAGUGCUGCAUGGUUGCGUACUGGUUGUAGGG---CGGCGGUGGAGGU---------C
..((((..((.(.(((((((((((((((((((....)))))....)))))))))((((((((.(((....)))))))))))...))))---).).))..)))).---------. ( -57.00)
>DroWil_CAF1 4489 86 - 1
GGCCCUGUCCUUG------GCC---------CUGCUGUGGU---------GGCCUCCAAUGUUGCAUAGCCGCAUACUGGCCGUAGGACGGUGGAGGCGGACCUACUCCA----
.((((((((((((------(((---------....((((((---------.((..(....)..))...))))))....))))).)))))))....)))(((.....))).---- ( -35.50)
>DroPer_CAF1 8456 102 - 1
GCCCUUGUCCUUGGCCCUGUCCGCCCGGCUGCUGCUGCGGUGCAAUGGGCGGCCGCCAGUGCUGCAUGGUUGCGUACUGGUUGUAGGG---CGGAGGUGGAGGU---------C
..((((..((((.((((((.((((((((((((....)))))....)))))))..((((((((.(((....)))))))))))..)))))---).))))..)))).---------. ( -56.60)
>consensus
GCCCUUGUCCUUGGCCCUGUCC_________CUGCUGCGGU_________GGCCGCCAGUGCUGCAUGGCUGCAUACUGGCCGUAGGG___CGGAGGUGGACCU_________C
..((.(.(((....(((((((((((((..((((.....))))...)))))))))((((((((.(((....)))))))))))...))))....))).).)).............. (-19.05 = -23.18 +   4.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:58 2006