Locus 5345

Sequence ID 3L_DroMel_CAF1
Location 14,751,146 – 14,751,259
Length 113
Max. P 0.951916
window8447

overview

Window 7

Location 14,751,146 – 14,751,259
Length 113
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 74.34
Mean single sequence MFE -38.95
Consensus MFE -27.03
Energy contribution -27.15
Covariance contribution 0.12
Combinations/Pair 1.31
Mean z-score -1.62
Structure conservation index 0.69
SVM decision value 1.42
SVM RNA-class probability 0.951916
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14751146 113 - 23771897
CCGCAUCUGUUGCUGGAGAAGAUCGGAGGCGCUUCGGCCGGUUCCCUGGCCGCCUGCUGUCUCCUCUGCGAUUUGCCAUUGGGUAAGUCUCUUCCCACUUGCUUACAUGGGUG
...(((((((.(((((.(((((..((((((((..(((((((....)))))))...)).)))))).....((((((((....))))))))))))))))...))....))))))) ( -47.50)
>DroPse_CAF1 15 91 - 1
CCACACCUAUUGCUAGAGAAAAUUGGUGGAGCUUCGGCCGGUUCCCUGGCAGCAUGCUGCCUGCUCUGUGAUUUGCCAUUGGGUGAGUUUU----------------------
...((((((..(((((((......((.((((((......))))))))(((((....)))))..)))))......))...))))))......---------------------- ( -29.30)
>DroEre_CAF1 237 113 - 1
CCGCAUCUGCUGCUGGAGAAGAUUGGGGGCGCAUCGGCCGGUUCCUUGGCCGCCUGCUGUCUCCUCUGCGAUUUACCACUGGGUGAGUCUCUUCCCACUCGCUUACAUGGGCG
..(((.....)))(((.(((((..(((((((((.(((((((....)))))))..))).)))))).....((((((((....))))))))))))))))..(((((....))))) ( -45.20)
>DroYak_CAF1 6912 113 - 1
CCGCAUCUGCUGCUGGAGAAGAUUGGAGGCGCAUCGGCCGGUUCCUUGGCCGCCUGCUGUCUCCUCUGCGAUUUGCCACUGGGUGAGUCUCUUCCCACUUGCUUACAUGGGCG
(((.....((...(((.(((((..(((((((((.(((((((....)))))))..))).)))))).....((((..((....))..))))))))))))...)).....)))... ( -45.20)
>DroMoj_CAF1 4391 99 - 1
CCGCAUCUACUUCUAGAAAAAAUUGGUGGAGCCUCGGCGGGCUCCCUUGCAGCAUGCUGCCUGCUAUGCGAUUUGCCACUAGGUAUUUCUUUUUACACU--------------
..(((((((....)))).......((.(((((((....)))))))))))).((((((.....)).))))((..((((....))))..))..........-------------- ( -29.30)
>DroAna_CAF1 5919 97 - 1
CCUCAUCUGCUGUUGGAGAAAAUUGGAGGCGCCUCGGCCGGUUCGCUGGCCGCCUGCUGCCUCCUUUGCGAUUUGCCAUUGGGUAAGUUU------ACCUGCC----------
........((....((........((((((((..(((((((....)))))))...)).)))))).....((((((((....)))))))).------.)).)).---------- ( -37.20)
>consensus
CCGCAUCUGCUGCUGGAGAAAAUUGGAGGCGCAUCGGCCGGUUCCCUGGCCGCCUGCUGCCUCCUCUGCGAUUUGCCACUGGGUAAGUCUCUUCCCACUUGCU__________
..((((((......))).......((((((((..(((((((....)))))))...)).))))))..)))((((((((....))))))))........................ (-27.03 = -27.15 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:50 2006