Locus 5344

Sequence ID 3L_DroMel_CAF1
Location 14,750,148 – 14,750,267
Length 119
Max. P 0.968018
window8446

overview

Window 6

Location 14,750,148 – 14,750,267
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -26.39
Consensus MFE -16.00
Energy contribution -17.75
Covariance contribution 1.75
Combinations/Pair 1.07
Mean z-score -2.69
Structure conservation index 0.61
SVM decision value 1.62
SVM RNA-class probability 0.968018
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14750148 119 - 23771897
AUUUCUUUUGCGAAUUGAUUAAAGUUAAUUUGCGUCAGAAUGAUAAAGUCAUAUCCUUCAUACAACCUUUAUACAAAAC-CUAUAAGGCACUAUAAUUCUGACCGCAACUGUAUGCACAC
.........((((((((((....))))))))))((((((((((((......))))...........(((((((......-.))))))).......)))))))).(((......))).... ( -24.80)
>DroSec_CAF1 1942 119 - 1
AUUUCUUCCGCGAAUUGAUUAAAUUUAAUUUGCGUCAGAAUGAUAAAGUCAUAUCCUUCAUACACCCUCUAUGUAGGCC-CUAUAGGGCCCUAUAAUUAUGACCGCAACUGUAUGCACAC
..((((..((((((((((......))))))))))..)))).......((((((.......((((.......))))((((-(....))))).......)))))).(((......))).... ( -33.20)
>DroSim_CAF1 1859 105 - 1
-UUUUUUCCGCGAAUUGAUUAAAUUUAAUGUGCGUCAGAAUGAUAAAGUCAUAUCCUUCAUAC-------------GCC-CUAUAGGGCACUAUAAUUCUGACCGCAACUGUAUGCACAC
-........(((((((.....)))))..((((.((((((((((((......))))........-------------(((-(....))))......)))))))))))).......)).... ( -26.80)
>DroYak_CAF1 6003 119 - 1
AUUUCUUCCGCGAGUUGAUUAAAUUUAUAUUGCGUCAGAGUGAUCA-GGCAAAUCCUUCAUACACCCUCUAUACCAGCCACAAGAAGGCACUAUAACUUUGCCCGCAACUGUACGCAUUC
.........((((((((..((((.(((((.((((((.((....)).-))).....((((........................))))))).))))).))))....)))))...))).... ( -20.76)
>consensus
AUUUCUUCCGCGAAUUGAUUAAAUUUAAUUUGCGUCAGAAUGAUAAAGUCAUAUCCUUCAUACACCCUCUAUACAAGCC_CUAUAAGGCACUAUAAUUCUGACCGCAACUGUAUGCACAC
.........(((((((((......)))))))))((((((((((((......)))).....................(((.......)))......)))))))).(((......))).... (-16.00 = -17.75 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:48 2006