| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,745,603 – 14,745,708 |
| Length | 105 |
| Max. P | 0.657506 |
| Location | 14,745,603 – 14,745,708 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.89 |
| Mean single sequence MFE | -27.02 |
| Consensus MFE | -18.17 |
| Energy contribution | -17.11 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14745603 105 + 23771897 GAUUGUCAGCGACAAUAAUAAACUAGGGAGGGAAAUGCAAGUAAACAACGCUAUCACGUUACGUGCUGCCCUCUUAAUUAUUUGUUUUUGU------------UUUGCUUAG--GCAAA- ..(((((((((((((.((((((...(((((((....(((.(((....(((......)))))).)))..))))))).....)))))).))))------------)..)))..)--)))).- ( -28.00) >DroSec_CAF1 10647 106 + 1 GAUUGUCAGCGACAAUAAUAAACUAGGGAGGAAAAUGCAAGUAAACAACGCUAUCACGUUACGUGCUGCCCUCUUAAUUAUUUGUUUUUGU------------UUCGCUUAG--GCAAAC ..(((((((((((((.((((((...((((((.....(((.(((...((((......))))...)))))))))))).....)))))).))).------------.)))))..)--)))).. ( -25.80) >DroSim_CAF1 10252 106 + 1 GAUUGUCAGCGACAAUAAUAAACUAGGGAGGAAAAUGCAAGUAAACAACGCUAUCACGUUACGUGCUGCCCUCUUAAUUAUUUGUUUUUGU------------UUUGCUUAG--GCAAAC ..(((((((((((((.((((((...((((((.....(((.(((...((((......))))...)))))))))))).....)))))).))))------------)..)))..)--)))).. ( -24.50) >DroEre_CAF1 10947 118 + 1 GAUUGCCAACAACAAUAACAAACUAGAGGGGAAAAUGCAAGUAAACAACGCUAUCACGUUACGUGCUGC-CUCCUAAUUAUUUGUUAUUGUUAUUUUGUUUGCUUUGCUUAACAGCAAA- ....((.(((((((((((((((....(((((.....(((.(((...((((......))))...))))))-))))).....))))))))))).....)))).)).(((((....))))).- ( -29.80) >consensus GAUUGUCAGCGACAAUAAUAAACUAGGGAGGAAAAUGCAAGUAAACAACGCUAUCACGUUACGUGCUGCCCUCUUAAUUAUUUGUUUUUGU____________UUUGCUUAG__GCAAA_ ..((((.((((((((.((((((.(((..((((....(((.(((...((((......))))...))))))..))))..))))))))).))))..............)))).....)))).. (-18.17 = -17.11 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:43 2006