Locus 5334

Sequence ID 3L_DroMel_CAF1
Location 14,731,417 – 14,731,510
Length 93
Max. P 0.873155
window8432

overview

Window 2

Location 14,731,417 – 14,731,510
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.44
Mean single sequence MFE -24.25
Consensus MFE -14.56
Energy contribution -16.42
Covariance contribution 1.86
Combinations/Pair 1.12
Mean z-score -3.22
Structure conservation index 0.60
SVM decision value 0.88
SVM RNA-class probability 0.873155
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14731417 93 + 23771897
AGACCGAUUAUAUUGC--CAUACAU---CCCCAGAACCAAUUCGUUUUGGUUUCUUUAACUUAAGCGUUACAAG---CCUGGGCAAUAUCAUUGGUCUACA
((((((((.(((((((--(......---..(((((((......)))))))...(((((((......)))).)))---....)))))))).))))))))... ( -30.40)
>DroSec_CAF1 37085 95 + 1
AGACCGAUUAUAUUGCCCCAAACAU---CCACAGAACCAAUUCGUUAGGGUUUCUUUAACUUAAGCGUUACGAG---CCUCGGCAAUAUCAUUGGUCUACA
((((((((.((((((((........---.....(((....)))....((((((...((((......)))).)))---))).)))))))).))))))))... ( -27.70)
>DroSim_CAF1 38785 93 + 1
AGACCGAUUAUAUUGC--CAUAUAU---CCCCAGAACCAAUUCGUUAGGGUUUCUUUAACUUAAGCGUUACGAG---CCUCGUCAAUAUCAUUGGUCUACA
((((((((.((((((.--(......---.....(((....)))....((((((...((((......)))).)))---))).).)))))).))))))))... ( -21.50)
>DroEre_CAF1 37831 93 + 1
AGACCAAUUGUAUUGC--CACACAU---CCCCAGAACCAAUUUGUUAGGGUUUCUUUAACUUAAGCGUUACAAG---CCUCAGCAAUAUCAUUGGUCUACA
((((((((.(((((((--.......---...((((.....))))...((((((...((((......)))).)))---)))..))))))).))))))))... ( -24.40)
>DroYak_CAF1 38360 93 + 1
AGACCAAUUGCAUUGC--CAUACAU---CCCCAGAACCAAUUUGUUAGGGUUUCUUUAACUUAAGCGUUACAAG---CCUCAGCAAUAUGAUUGGUCUACA
(((((((((..(((((--.......---...((((.....))))...((((((...((((......)))).)))---)))..)))))..)))))))))... ( -23.50)
>DroAna_CAF1 35832 89 + 1
----------CCUUGA--CUUUCAUGUCCCCCAGAACCAAUUUGUUAGGGUUUCUUUAACUUAAGCGUUAAUCAUCUCCUGGACGAUAUGGUUGGCUUGCA
----------....((--(......)))..(((..((((..(((((.(((.....(((((......)))))......))).)))))..)))))))...... ( -18.00)
>consensus
AGACCGAUUAUAUUGC__CAUACAU___CCCCAGAACCAAUUCGUUAGGGUUUCUUUAACUUAAGCGUUACAAG___CCUCGGCAAUAUCAUUGGUCUACA
((((((((.(((((((.................(((((..........)))))...((((......))))............))))))).))))))))... (-14.56 = -16.42 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:35 2006