| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,725,820 – 14,725,915 |
| Length | 95 |
| Max. P | 0.559131 |
| Location | 14,725,820 – 14,725,915 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 75.24 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -13.51 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14725820 95 + 23771897 ACUUGCCUGUGA-U---UUCCUCAUUUUCCAAGAUUGCACCAUGCGACCGUUUGGUAAUGUAUUUCUUCCUCAUUAUUUUCCAUCUCGUAGGCGAAAAC ..((((((((((-.---...........(((((.((((.....))))...)))))(((((...........))))).........)))))))))).... ( -18.50) >DroGri_CAF1 64240 93 + 1 ACUCACCUGAAACU---UUACCUACUUGCUGGGAUUGGACCAGGCAACCGUUUGAUAAGCGAUCUGAUUGCCAGCAGU---UGUCGCAUGGGCAAAAAC ..............---........((((((((((..((...(....)((((.....)))).))..))).)))))))(---((((.....))))).... ( -20.90) >DroSec_CAF1 31577 95 + 1 ACUUGCCUGUGA-U---UUCCUCAUUUGCCAGGAUUGCACCAUGCGACCGUUUGGUAAUGGAUUUUUUCCCCAUUAUUUUCCAUCUCGUAGGCGAAUAC ..((((((((((-.---........((((((((.((((.....))))...))))))))((((.................))))..)))))))))).... ( -23.73) >DroSim_CAF1 33279 95 + 1 ACUUGCCUGUGA-U---UUCCUCAUUUGCCAGGAUUGCACCAUGCGACCGUUUGGUAAUGGAUUUUUUCCUCAUUAUUUUCCAUCUCGUAGGCGAAUAC ..((((((((((-.---........((((((((.((((.....))))...)))))))).(((.....)))...............)))))))))).... ( -23.90) >DroYak_CAF1 32384 92 + 1 ACUUGCCUGUGG-U---UUUCUCAUUUGCCAGGAUUGCACCAUGCGACCGUUUGGUAAUGGAUU---UCCUCGUCAUUUGCAAUUUCGUAGGCGAAUAC ..((((((((((-.---.((..((..(((.((((.....((((...(((....))).))))...---)))).).))..)).))..)))))))))).... ( -24.00) >DroMoj_CAF1 70731 96 + 1 ACUCACCUGUAGAUUGAUUACCUAUUUGCUAGGAUUGCACCAGGCGACUGUUUGGUAAACGAUGGUCUUUUCAUCAGC---UGCCUCAUAGGCAAACAC .....(((((((((.(.....).)))))).)))...(((((((((....)))))))....(((((.....))))).))---((((.....))))..... ( -25.60) >consensus ACUUGCCUGUGA_U___UUCCUCAUUUGCCAGGAUUGCACCAUGCGACCGUUUGGUAAUGGAUUUUUUCCUCAUCAUUUUCCAUCUCGUAGGCGAAUAC ..((((((((((.............((((((((.((((.....))))...)))))))).(((.....)))...............)))))))))).... (-13.51 = -14.23 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:34 2006