Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,724,225 – 14,724,315 |
Length | 90 |
Max. P | 0.963758 |
Location | 14,724,225 – 14,724,315 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 95.46 |
Mean single sequence MFE | -27.94 |
Consensus MFE | -27.02 |
Energy contribution | -26.54 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.07 |
Mean z-score | -1.42 |
Structure conservation index | 0.97 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14724225 90 - 23771897 CGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGGCUAUAUGUUUUUACCCCGUA-GGGUCUCGGUCUCU .(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...)))-)))))))).)))). ( -27.70) >DroSec_CAF1 29999 90 - 1 CGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUACCCCGUA-GGGUCUCGAUCUCU .(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...)))-)))))))).)))). ( -27.70) >DroSim_CAF1 31706 89 - 1 CGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUGCCCCGUA-GGGUCUCG-UCUCU .(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...)))-))))))))-)))). ( -27.30) >DroEre_CAF1 30014 90 - 1 CGCGGAGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUUUAUGUUUUUACCCUGUA-GGGUCUCGGUCUCU .(((((.((..((((((....))).)))...)))))))....((((.((((((.(((.....))).....((....-)))))))).)))). ( -27.60) >DroYak_CAF1 30628 91 - 1 CGCGGAGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGGCUUUAUGUUUUUGCCCUGUAAGGGUCUCGGUCUCU .(((((.((..((((((....))).)))...)))))))....((((.((((((((((...........))).......))))))).)))). ( -29.41) >consensus CGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUACCCCGUA_GGGUCUCGGUCUCU .(((((.((..((((((....))).)))...)))))))....((((.((((((.(((.....)))....((......)))))))).)))). (-27.02 = -26.54 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:33 2006