Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,723,020 – 14,723,116 |
Length | 96 |
Max. P | 0.980327 |
Location | 14,723,020 – 14,723,116 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 98.55 |
Mean single sequence MFE | -17.50 |
Consensus MFE | -17.50 |
Energy contribution | -17.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 1.00 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14723020 96 - 23771897 UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAA-AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA ....((((.(((((((((((((......))))))...........................-..((....)).)).))))).))))........... ( -17.50) >DroSec_CAF1 28837 96 - 1 UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAA-AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA ....((((.(((((((((((((......))))))...........................-..((....)).)).))))).))))........... ( -17.50) >DroSim_CAF1 30545 96 - 1 UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAA-AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA ....((((.(((((((((((((......))))))...........................-..((....)).)).))))).))))........... ( -17.50) >DroEre_CAF1 28772 96 - 1 UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCAAACCAACAAACAAAA-AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA ....((((.(((((((((((((......))))))...........................-..((....)).)).))))).))))........... ( -17.50) >DroYak_CAF1 29398 97 - 1 UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCAAACCAACAAACAAAAAAAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAU ....((((.(((((((((((((......)))))).....................((........))......)).))))).))))........... ( -17.50) >consensus UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAA_AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA ....((((.(((((((((((((......)))))).....................((........))......)).))))).))))........... (-17.50 = -17.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:32 2006