Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,562,895 – 1,563,033 |
Length | 138 |
Max. P | 0.707999 |
Location | 1,562,895 – 1,562,993 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 77.08 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -13.32 |
Energy contribution | -15.45 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.21 |
Mean z-score | -1.98 |
Structure conservation index | 0.56 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1562895 98 - 23771897 AUUUUGGG--UUUUGUGCGUGGGU--UUUCUUUUCACAGUGCUAGCGUAUAAGUAAUAAGUAAACAGAGUAGUCUGGCUGUUUAUUGAUAUAUUCGAGGAGU .(((((((--((((((((((.(((--...((......)).))).)))))))))(((((((((..((((....))))..)))))))))....))))))))... ( -20.50) >DroSec_CAF1 7323 95 - 1 AUUUUGGG--CUUUGUGAGUGGAUGGUUUCCAUUCACAGUGCUAGCGU--AAGUAAUAAGUAAACAGCGAAGUCUGCCUGUUUAUUGAUAUAUUCGA---GU ......((--(.(((((((((((.....))))))))))).))).((..--..))....(((((((((((.....)).)))))))))...........---.. ( -29.20) >DroSim_CAF1 7419 95 - 1 AUUUUGGG--UUUUGUGAGUGGAUGGUUUCCAUUCACAGUGCUAGCGU--AAGUAAUAAGUAAACAGAGAAGUCUGCCUGUUUAUUGAUAUAUUCGA---GU ......((--(.(((((((((((.....))))))))))).))).((..--..))....(((((((((((....))..)))))))))...........---.. ( -27.10) >DroYak_CAF1 7514 80 - 1 AUAUUAUGUAUUUUGUGGGUG-----------------CUGCCAGCAU--AGGCAAUAAAUAAACAAAGAAGUCUGACUGUUUAUUGAUGCAUUCGA---GU ...............((((((-----------------(((((.....--.))))...((((((((.((....))...))))))))...))))))).---.. ( -18.20) >consensus AUUUUGGG__UUUUGUGAGUGGAU__UUUCCAUUCACAGUGCUAGCGU__AAGUAAUAAGUAAACAGAGAAGUCUGCCUGUUUAUUGAUAUAUUCGA___GU ............(((((((((((.....)))))))))))((((........))))...(((((((((..........)))))))))................ (-13.32 = -15.45 + 2.13)
Location | 1,562,917 – 1,563,033 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.30 |
Mean single sequence MFE | -26.41 |
Consensus MFE | -16.14 |
Energy contribution | -19.45 |
Covariance contribution | 3.31 |
Combinations/Pair | 1.10 |
Mean z-score | -1.97 |
Structure conservation index | 0.61 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1562917 116 + 23771897 CAGCCAGACUACUCUGUUUACUUAUUACUUAUACGCUAGCACUGUGAAAAGAAA--ACCCACGCACAAAA--CCCAAAAUAAGCGGAGAUAAGCUGUUGGGCAACCAAAAUAUCGUUUGC ....(((((..(((((((((..............(....)..((((....(...--..)....))))...--.......)))))))))........((((....))))......))))). ( -20.80) >DroSec_CAF1 7342 116 + 1 CAGGCAGACUUCGCUGUUUACUUAUUACUU--ACGCUAGCACUGUGAAUGGAAACCAUCCACUCACAAAG--CCCAAAAUAAGCGGAGAUAAGCUCUUGGGCAACCAAAAUAUCGUUUGC ...((((((((((((((.............--))....((..(((((.((((.....)))).)))))..)--)........))))))((((.....((((....))))..)))))))))) ( -30.72) >DroSim_CAF1 7438 116 + 1 CAGGCAGACUUCUCUGUUUACUUAUUACUU--ACGCUAGCACUGUGAAUGGAAACCAUCCACUCACAAAA--CCCAAAAUAAGCAGAGAUAAGCUCUUGGGCAACCAAAAUAUCGUUUGC ...((((((.((((((((((..........--..(....)..(((((.((((.....)))).)))))...--.......)))))))))).......((((....))))......)))))) ( -33.70) >DroYak_CAF1 7533 101 + 1 CAGUCAGACUUCUUUGUUUAUUUAUUGCCU--AUGCUGGCAG-----------------CACCCACAAAAUACAUAAUAUAAGAGGAGAUAAGCUCUUGGGCAACCAAAAUAUCGGUUGC .....((((......))))......((((.--.....))))(-----------------((.((................(((((........)))))((....))........)).))) ( -20.40) >consensus CAGGCAGACUUCUCUGUUUACUUAUUACUU__ACGCUAGCACUGUGAAUGGAAA__AUCCACUCACAAAA__CCCAAAAUAAGCGGAGAUAAGCUCUUGGGCAACCAAAAUAUCGUUUGC ...((((((.((((((((((.......((........))...(((((.(((.......))).)))))............)))))))))).......((((....))))......)))))) (-16.14 = -19.45 + 3.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:33 2006