Locus 5329

Sequence ID 3L_DroMel_CAF1
Location 14,713,219 – 14,713,311
Length 92
Max. P 0.533688
window8424

overview

Window 4

Location 14,713,219 – 14,713,311
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 81.55
Mean single sequence MFE -24.78
Consensus MFE -16.51
Energy contribution -17.65
Covariance contribution 1.14
Combinations/Pair 1.14
Mean z-score -1.43
Structure conservation index 0.67
SVM decision value 0.00
SVM RNA-class probability 0.533688
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14713219 92 - 23771897
GCCCUUUGGAUUACAUUGCGAAUAGACCGA----UGAGUGUCUGUUCUGUAGGAGAAACAUAUUCAUGCAACCCAGUAUUUGGGGCCAAGGCAAUA
(((..((((......(((((((((((((..----...).))))))))....(((........)))..))))(((((...))))).))))))).... ( -27.00)
>DroPse_CAF1 48560 95 - 1
GCCCUUAGGAUUACAAAUGGAAUAGACCGACACAUGCGCGUCUUAUCCACAGGCA-AAAAUAUUGAUGUAACCCGGUUUUUGGGGCUAAGGAAAUA
..((((((..(((((..((((..((((((.(....))).))))..))))....((-(.....))).)))))((((.....)))).))))))..... ( -23.60)
>DroSim_CAF1 20770 92 - 1
GCCCUUUGGAUUACAUUGCAAAUAGAGCGA----UGAGUAUCUGUUCUGUAGGAGAAACAUAUUCAAGCAACCCAGUAUUUGGGGCCAAGGCAAUA
(((..((((......((((..(((((((((----(....))).))))))).(((........)))..))))(((((...))))).))))))).... ( -24.40)
>DroEre_CAF1 18916 92 - 1
CCCCUUUGGAUUACAUUUGGAAUAGACCGA----CAAGUGUCUGUUCUUGAGGAGAAACAUAUUCAUGCAACCCAGUAUUUGGGGCCAAGGCAAUA
...((((((....(....((((((((((..----...).)))))))))....)..................(((((...))))).))))))..... ( -22.30)
>DroYak_CAF1 19408 92 - 1
GCCCUUUGGAUUACAUUUGGAAUAGACCGU----UGAGUGUCUGUUCCUCAGGAGAAACAUAUUCUUGCAACCCAGUAUUUGGGGCCAAGGCAAUA
(((..((((.........((((((((((..----...).))))))))).((((((.......))))))...(((((...))))).))))))).... ( -27.80)
>DroPer_CAF1 48929 95 - 1
GCCCUUAGGAUUACAAAUGGAAUAGACCGACACAUGCGCGUCUUAUCCACAGGCA-AAAAUAUUGAUGUAACCCGGUUUUUGGGGCUAAGGAAAUA
..((((((..(((((..((((..((((((.(....))).))))..))))....((-(.....))).)))))((((.....)))).))))))..... ( -23.60)
>consensus
GCCCUUUGGAUUACAUUUGGAAUAGACCGA____UGAGUGUCUGUUCCACAGGAGAAACAUAUUCAUGCAACCCAGUAUUUGGGGCCAAGGCAAUA
...((((((.........((((((((((.........).))))))))).......................(((((...))))).))))))..... (-16.51 = -17.65 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:27 2006