Locus 5328

Sequence ID 3L_DroMel_CAF1
Location 14,712,349 – 14,712,445
Length 96
Max. P 0.983471
window8423

overview

Window 3

Location 14,712,349 – 14,712,445
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 91.75
Mean single sequence MFE -12.16
Consensus MFE -10.52
Energy contribution -10.52
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.87
SVM decision value 1.94
SVM RNA-class probability 0.983471
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14712349 96 + 23771897
AUAAUCAGGGCAAUAAUUGUGCAACAUAACAUAAACAUUGAUAAAAAAAAAAAGAACACUGACAUAAUAGACAUUAUAGUUAUAAUUGCCAGAUAA
...(((..((((((..(((((........))))).........................(((((((((....))))).))))..)))))).))).. ( -12.70)
>DroSec_CAF1 18187 94 + 1
AUAAUCAGGGCAAUAAUUGUGCAACAUAACAUAAACAUUGAUAAAACAAA--AAAACACUGACAUAAUAGACAUUAUAGUUAUAAUUGCCAGAUAA
...(((..((((((..(((((........)))))................--.......(((((((((....))))).))))..)))))).))).. ( -12.70)
>DroSim_CAF1 19880 93 + 1
AUAAUCAGGGCAAUAAUUGUGCAACAUAACAUAAACAUUGAUAAAAGAA---AAAACACUGACAUAAUAGACAUUAUAGUUAUAAUUGCCAGAUAA
...(((..((((((..(((((........)))))...............---.......(((((((((....))))).))))..)))))).))).. ( -12.70)
>DroEre_CAF1 18048 84 + 1
AUAAUCAGGGCAAUAAUUGUGCAAC-----AUAAACAUUGAUAAAAAA-------ACACUGACAUAAUAGACAUUAUAGUUAUAAUUGCCAGAUAA
...(((..((((((..(((((...)-----))))..............-------....(((((((((....))))).))))..)))))).))).. ( -11.50)
>DroYak_CAF1 18521 90 + 1
AUAAUCAGGGCAAUAAUUGUGCAAC-----AUAAACAUUGAUAAAAAAAA-AAUAACACUGACAUAAUAGACAUUACAGUUAUAAUUGCCAGAUAA
...(((..(((((((((((((...(-----(.......))..........-.......(((......)))....)))))))))...)))).))).. ( -11.20)
>consensus
AUAAUCAGGGCAAUAAUUGUGCAACAUAACAUAAACAUUGAUAAAAAAAA__AAAACACUGACAUAAUAGACAUUAUAGUUAUAAUUGCCAGAUAA
...(((..((((((.((((((((....................................)).)))))).(((......)))...)))))).))).. (-10.52 = -10.52 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:26 2006