Locus 5326

Sequence ID 3L_DroMel_CAF1
Location 14,697,403 – 14,697,497
Length 94
Max. P 0.843879
window8419

overview

Window 9

Location 14,697,403 – 14,697,497
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.12
Mean single sequence MFE -25.10
Consensus MFE -17.87
Energy contribution -18.37
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.71
SVM decision value 0.76
SVM RNA-class probability 0.843879
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14697403 94 + 23771897
CGCAUGUUGCGG-CCGCAGCAAGUGUUUGUGUGGCAUGCCGCAAAUUCAUUAUUAUUUUCAUCU--------UCCCACCCCCGCA------------GCUGCA---UAUAAACACUUU--
....((((((..-..))))))((((((((((((.((.((.((......................--------..........)).------------))))))---))))))))))..-- ( -25.05)
>DroPse_CAF1 34115 116 + 1
CGCAUGUUGCGGGCGGCACCAAGUGU-UGUGUGGCAUGCCGCAAAUUCAUUAUUUUUUCCCUCCACAGACU-CCUCCUCCCCCC--UACCGUCGGGCUCUGCACUGUAUAAACACUUCCA
.((((((..(..(((((((...))))-))))..))))))..........................((((..-((..(.......--....)..))..))))................... ( -23.70)
>DroEre_CAF1 3190 97 + 1
CGCAUGUUGCGG-CCGCAGCAAGUGUUUGUAUGGCAUGCCGCAAAUUCAUUAUUAUUUUCAUCC-----UCCUCCCGCCCCCGCA------------GCUGCA---UAUAAACACUAU--
....((((((..-..))))))((((((((((((.((.((.((......................-----.............)).------------))))))---))))))))))..-- ( -25.55)
>DroYak_CAF1 3404 94 + 1
CGCAUGUUGCGG-CCGCAGCAAGUGUUUGUGUGGCAUGCCGCAAAUUCAUUAUUAUUUUCAUCC--------CCCCGCCCCCGCA------------GCUGCA---UAUAAACACUUU--
.(((.(((((((-..((.((((....))))((((....))))......................--------....))..)))))------------))))).---............-- ( -25.50)
>DroAna_CAF1 2745 104 + 1
CGCAUGUUGCGG-CCGCAGCAAGUGUUUGUGUGGCAUGCCGCAAAUUCAUUAUUAUUUUCAACU-----UU-CCCCAUCCUCCCAGUACCA------UCUGCA---CAUAAACACUCUGC
.(((((((((..-..))))))((((((((((((((.....))......................-----..-...........(((.....------.)))))---)))))))))).))) ( -27.10)
>DroPer_CAF1 34168 116 + 1
CGCAUGUUGCGGGCGGCACCAAGUGU-UGUGUGGCAUGCCGCAAAUUCAUUAUUUUUUCCCUCCACAGACU-CCUCCUCCUCCC--UACCGUCGGGCUCUGCACUGUAUAAACACUUCCA
.((((((..(..(((((((...))))-))))..))))))..........................((((..-((..(.......--....)..))..))))................... ( -23.70)
>consensus
CGCAUGUUGCGG_CCGCAGCAAGUGUUUGUGUGGCAUGCCGCAAAUUCAUUAUUAUUUUCAUCC______U_CCCCACCCCCCCA____________GCUGCA___UAUAAACACUUU__
.(((((((((.....))))))((((....(((((....)))))....))))................................................))).................. (-17.87 = -18.37 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:22 2006