Locus 5324

Sequence ID	3L_DroMel_CAF1
Location	14,694,630 – 14,694,730
Length	100
Max. P	0.636369

overview

Window 7

Location	14,694,630 – 14,694,730
Length	100
Sequences	4
Columns	111
Reading direction	forward
Mean pairwise identity	73.30
Mean single sequence MFE	-14.26
Consensus MFE	-5.48
Energy contribution	-5.92
Covariance contribution	0.44
Combinations/Pair	1.15
Mean z-score	-2.57
Structure conservation index	0.38
SVM decision value	0.21
SVM RNA-class probability	0.636369
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14694630 100 + 23771897
-----CUAUACU----CUUCCUAUAAUAACAGCAUUUCAGUACUUUUAUAUUAGGCUUUCAAUUUUAAGCCUCAAUUUCCUUUUCAAAUUGA--AAAGUACUUUAAAAUAA
-----.......----......................(((((((((.....((((((........))))))((((((.......)))))))--))))))))......... ( -16.60)
>DroSec_CAF1 518 103 + 1
------GAUAUCCGAUCUUCCUAUAUUAACAGCAUUUCAGUACUUUUAUAUUAGGCUUUCAAUUUUAAGCCUCAAUUUUCUCUUCAAAUAGA--AAAGUACUUUAAAUUAA
------................................(((((((((.((((((((((........))))))..............)))).)--))))))))......... ( -14.83)
>DroSim_CAF1 517 99 + 1
-----CUAUACC----CUUCCAAUAUAAACAGCACUUAAGUACUUUUAUAUUAGGCUUUCAAUUUUAAGCCUCAAUUUUA---CCAAAUUGAAAAAAGUACCUUAAAAUAA
-----.......----...................((((((((((((......(((((........)))))(((((((..---..))))))).))))))).)))))..... ( -17.70)
>DroYak_CAF1 521 99 + 1
UUUGGGAAGAAC----CUCCUUAUUUUAACAGCAUUUCAUUAAUUUUAUAUUAGGCAUUCAAACCAAACAUU------CCUCUUUAAAUUGA--AAAGUAGCUCAAAAUGA
...((((.....----.))))((((((...(((((((..(((((((...(..(((.((...........)).------)))..).)))))))--.)))).))).)))))). (  -7.90)
>consensus
_____CUAUACC____CUUCCUAUAUUAACAGCAUUUCAGUACUUUUAUAUUAGGCUUUCAAUUUUAAGCCUCAAUUUCCUCUUCAAAUUGA__AAAGUACCUUAAAAUAA
.......................................(((((((......((((((........))))))......................))))))).......... ( -5.48 =  -5.92 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:20 2006