Locus 5323

Sequence ID 3L_DroMel_CAF1
Location 14,689,065 – 14,689,155
Length 90
Max. P 0.999745
window8416

overview

Window 6

Location 14,689,065 – 14,689,155
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 96.44
Mean single sequence MFE -24.40
Consensus MFE -22.34
Energy contribution -22.54
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.69
Structure conservation index 0.92
SVM decision value 3.99
SVM RNA-class probability 0.999745
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14689065 90 - 23771897
CAACAACGAAAUCGGUGUUACGGAGCACGUUUAAGCAUGUCAAUGCCAGAUGCUGGCUGACAAAAUGAUGAACAAUACGAACACAAAACA
......((....))(((((.((..((........)).(((((..(((((...))))))))))...............)))))))...... ( -20.50)
>DroSec_CAF1 37828 90 - 1
CAACAACGGAAUUGGUGUUACGGAGCACGUUUAGGCAUGUCAAUGCCAGAUGCUGGCUGACAAAAUGAUGAACAAUCCGAACACAAAACA
..............(((((.((((....(((((..(((((((..(((((...))))))))))...)).)))))..)))))))))...... ( -26.00)
>DroSim_CAF1 38962 90 - 1
CAACAACGGAAUUGGUGUUACGGAGCACGUUUAGGCAUGUCAAUGCCAGAUGCUGGCUGACAAAAUGAUGAACAAUCCGAACACAAAACA
..............(((((.((((....(((((..(((((((..(((((...))))))))))...)).)))))..)))))))))...... ( -26.00)
>DroEre_CAF1 37792 90 - 1
CAACAACGGAAUUGGUGUUACCGAGCACGUUUAAGCAUGUCAAUGCCAGAUGCUGGCUGACAAAAUGAUGAACAAUCCGUACACACAACA
.....(((((....(((((....)))))(((((..(((((((..(((((...))))))))))...)).)))))..))))).......... ( -24.50)
>DroYak_CAF1 38679 90 - 1
CAACAACGGAAUUGGUGUUACGGAGCACGUUUAAGCAUGUCAAUGCCAGAUGCUGGCUGACAAAAUGAUGAACAAUCCGUACACAAAACA
..............((((.(((((....(((((..(((((((..(((((...))))))))))...)).)))))..)))))))))...... ( -25.00)
>consensus
CAACAACGGAAUUGGUGUUACGGAGCACGUUUAAGCAUGUCAAUGCCAGAUGCUGGCUGACAAAAUGAUGAACAAUCCGAACACAAAACA
......((((....(((((....)))))(((((..(((((((..(((((...))))))))))...)).)))))..))))........... (-22.34 = -22.54 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:19 2006