| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,680,317 – 14,680,421 |
| Length | 104 |
| Max. P | 0.669597 |
| Location | 14,680,317 – 14,680,421 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.12 |
| Mean single sequence MFE | -21.04 |
| Consensus MFE | -9.41 |
| Energy contribution | -10.50 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14680317 104 - 23771897 ---------------GAAGUGAUAAGCUGGUUAUUAUAAUAAUAAGUGAGUGACUAACAAUGAAGUAUGGUCAAAGGUCACAAACGAAUU-AUAAUAAAAUUAGGCGGUAAACCUGAACA ---------------..........(((..((((((((((.....((((.((((((((......)).))))))....))))......)))-))))))).....)))((....))...... ( -20.00) >DroSec_CAF1 30161 96 - 1 ---------------GAAGUGAUAAGCUGGUUAUUAUAAUAAUAAGUGAGUGACUAACAAUGAAGAACGGUCAAAGGUCACUAACAAAUU-AUAAUAACAUUAGGCGAUA--------AA ---------------..........(((.(((((((((((....(((((.(((((.............)))))....))))).....)))-))))))))....)))....--------.. ( -20.92) >DroSim_CAF1 31284 104 - 1 ---------------GAAGUGAUAAGCUGGUUAUUAUAAUAAUAAGUGAGUGACUAACAAUGAAGUAUGGUCAAAGGUCACAAACGAAUU-AUAAUAACAUUAGGCGAUAACCCUGAAAA ---------------..........(((.(((((((((((.....((((.((((((((......)).))))))....))))......)))-))))))))....))).............. ( -22.20) >DroEre_CAF1 30456 117 - 1 --GAAAAAGUCCAGAGAAGUGAUAAGCAGAUAAUUAUUAUAAUAAGUGAGUGACUAACAAUGAAGUAUGGCCGAAGGUCGCAAACAAAUU-UUAAUAAAAUUAGGCGAUAAGCCUGAAAA --................(((((((........))))))).....((..((((((....................))))))..)).....-.........((((((.....))))))... ( -18.25) >DroYak_CAF1 30960 118 - 1 -AGAAAAAGUCCAGUCAAGUGAUAAGCUGAUUAUUAUAAUAAUAAGCGAGUGACUAACAAUGAAGUUUGGUCAAAGGUCGCAAAGAAAUUUUUGAUAAAAUUAGG-GAUAACCCUGAAAA -............((((((((((..(((.(((((....))))).)))...((((((((......).)))))))...)))))(((....))))))))....(((((-(....))))))... ( -25.60) >DroAna_CAF1 26828 119 - 1 GACAAAGAGUCCAGUCAACUGAUAAGCUGAUAAUUAUAAUAAUAAGCGAGUGACUAACAAUGGGACUUGGCCAAAGAUCACGUCGAAAUU-UUAAUCAAAUGAGGCGGAAACUCUGAGAA ..(..(((((((.((((.((....)).))))...............(((((..(.......)..)))))(((...(((...)))......-....((....))))))))..))))..).. ( -19.30) >consensus _______________GAAGUGAUAAGCUGAUUAUUAUAAUAAUAAGUGAGUGACUAACAAUGAAGUAUGGUCAAAGGUCACAAACAAAUU_AUAAUAAAAUUAGGCGAUAACCCUGAAAA ..................(((((..(((.(((((....))))).)))...((((((...........))))))...)))))...................(((((.......)))))... ( -9.41 = -10.50 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:08 2006