Locus 5317

Sequence ID 3L_DroMel_CAF1
Location 14,679,901 – 14,680,004
Length 103
Max. P 0.636619
window8403

overview

Window 3

Location 14,679,901 – 14,680,004
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.66
Mean single sequence MFE -23.72
Consensus MFE -17.53
Energy contribution -18.42
Covariance contribution 0.89
Combinations/Pair 1.09
Mean z-score -2.25
Structure conservation index 0.74
SVM decision value 0.21
SVM RNA-class probability 0.636619
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14679901 103 + 23771897
CUUUUCAUAUUAAUUAAUAGUU-UUG--UUUUUCCUCGC--------------CCAUUGUCAUUUUUUGGCAAUGAGCUUCGGGCUUUUUGGCUUGAUUAGCCCCAGAAAUGAAAAUCAA
.(((((((..............-...--.........((--------------.((((((((.....)))))))).))...(((((..((.....))..))))).....))))))).... ( -25.60)
>DroSec_CAF1 29745 102 + 1
GUUUUCAUAUUAAUUAAUAGUU-UUG--UUUUUCUUUGC--------------CCAUUGUCAUUU-UUGGCAAUGAGCUCCGGGCUUUUUGGCUUGAUUAGCCCUAGAAAUGAAAAUCAA
((((((((..............-...--.........((--------------.((((((((...-.)))))))).))...(((((..((.....))..))))).....))))))))... ( -26.50)
>DroSim_CAF1 30868 103 + 1
GUUUUCAUAUUAAUUAAUAGUU-UUG--UUUUUCUUUAC--------------CCAUUGUCAUUUUUUGGCAAUGAGCUCCGGGCUUUUUGGCUUGAUUAGCCCUAGAAAUGAAAAUCAA
((((((((..............-...--...........--------------.((((((((.....))))))))......(((((..((.....))..))))).....))))))))... ( -23.60)
>DroEre_CAF1 30040 103 + 1
UUUUUCAUAUUAAUUAAUAGUC-UUG--UUUUUCCUCGC--------------CCAUUGUCAUUUUUUGGCAAUGAGCUCCGGGCUUUUUGGCUGGAUUAGCCCUAGAAAUGAAAACCAA
.(((((((..............-...--.........((--------------.((((((((.....)))))))).))...(((((..((.....))..))))).....))))))).... ( -25.60)
>DroYak_CAF1 30541 104 + 1
CUUUUCAUAUUAAUUAAUAGUUUUUG--UUUUUCCUCGC--------------CCAUUGUCAUUUUUUGGCAAUGAGCUCGGGGCUUUUUGGCUGGAUUAGCCCUAGAAAUGUAAAUCAA
......................((((--..((((...((--------------.((((((((.....)))))))).))..((((((..((.....))..)))))).))))..)))).... ( -24.90)
>DroAna_CAF1 26343 119 + 1
UCUACCAUAUUAAUUAAUAGUU-UUGGGUUUUUUUUAGCCAUUUUUUUAGUCACCAUUGUCAUUUUAUCUCAAUGAGCUUUAGGCUUUUUGCUUUGAUUAGUUCCGAGAAUGAAAAUCAA
......................-...((((......))))......................(((((((((...(((((..((((.....)))).....))))).))).))))))..... ( -16.10)
>consensus
CUUUUCAUAUUAAUUAAUAGUU_UUG__UUUUUCCUCGC______________CCAUUGUCAUUUUUUGGCAAUGAGCUCCGGGCUUUUUGGCUUGAUUAGCCCUAGAAAUGAAAAUCAA
.(((((((..............................................((((((((.....))))))))......(((((..((.....))..))))).....))))))).... (-17.53 = -18.42 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:06 2006