Locus 5316

Sequence ID 3L_DroMel_CAF1
Location 14,678,625 – 14,678,745
Length 120
Max. P 0.570731
window8402

overview

Window 2

Location 14,678,625 – 14,678,745
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -19.68
Consensus MFE -19.00
Energy contribution -19.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.17
Structure conservation index 0.97
SVM decision value 0.07
SVM RNA-class probability 0.570731
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14678625 120 + 23771897
UCAUCCCAAUUGCACUCAUUAUGUCGCACUUGUCCGUCAAAGUUGCAGCUAAUUUUCCCCAGCUCAGCAAAAGUUGAAAACUUAAUUAACUCAUUUCUCAAAUAUGCACCCCAGGACACC
..........(((((.......)).)))..(((((......((((.((((..........))))))))...((((((........))))))......................))))).. ( -19.00)
>DroSec_CAF1 28485 120 + 1
UCAUCCCAAUUGCACUCAUUAUGUCGCACUUGUCCGUCAAAGUUGCAGCUAAUUUUCCCCAGCUCAGCAGAAGUUGAAAACUUAAUUAACUCAUUUCUCAAAUAUGCACCCCAGGACACC
..........(((((.......)).)))..(((((......((((.((((..........)))))))).((.(((((........))))))).....................))))).. ( -19.60)
>DroSim_CAF1 29605 120 + 1
UCAUCCCAAUUGCACUCAUUAUGUCGCACUUGUCCGUCAAAGUUGCAGCUAAUUUUCCCCAGCUCAGCAGAAGUUGAAAACUUAAUUAACUCAUUUCUCAAAUAUGCACCCCAGGACACC
..........(((((.......)).)))..(((((......((((.((((..........)))))))).((.(((((........))))))).....................))))).. ( -19.60)
>DroEre_CAF1 28851 120 + 1
UCAUCCCAAUUGCACUCAUUAUGUCGCACUUGUCCGUCAAAGUUGCAGCUAAUUUUCCCCAGCUCAGCAGAAGUUGAAAACUUAAUUAACUCAUUUCUCAAAUAUGUACCCCAGGACACC
..........(((((.......)).)))..(((((......((((.((((..........)))))))).((.(((((........))))))).....................))))).. ( -19.60)
>DroYak_CAF1 29312 120 + 1
UCAAGCCAAUUGCACUCAUUAUGUCGCACUUGUCCGUCAAAGUUGCAGCUAAUUUUCCCCAGCUCAGCAGAAGUUGAAAACUUAAUUAACUUAUUUCUCAAAUAUGCACCCCAGGACACC
..........(((((.......)).)))..(((((......((((.((((..........))))))))..(((((((........))))))).....................))))).. ( -20.60)
>consensus
UCAUCCCAAUUGCACUCAUUAUGUCGCACUUGUCCGUCAAAGUUGCAGCUAAUUUUCCCCAGCUCAGCAGAAGUUGAAAACUUAAUUAACUCAUUUCUCAAAUAUGCACCCCAGGACACC
..........(((((.......)).)))..(((((......((((.((((..........))))))))...((((((........))))))......................))))).. (-19.00 = -19.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:05 2006