| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,677,723 – 14,677,816 |
| Length | 93 |
| Max. P | 0.605202 |
| Location | 14,677,723 – 14,677,816 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.31 |
| Mean single sequence MFE | -25.72 |
| Consensus MFE | -16.17 |
| Energy contribution | -17.21 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.605202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14677723 93 - 23771897 GGCAUUAAGACAAUCAUUUUAAUUGGAGUGCCACUUGCGUACAUGCAA--CCAAAUCCCAACGCGACUAGGGC--------AUC----UGCCCUCUCGCUCUGUCGG------------- ((((((....((((.......)))).))))))..(((((....)))))--............((((..(((((--------...----.))))).))))........------------- ( -26.00) >DroSec_CAF1 27566 93 - 1 GGCAUUAAGACAAUCAUUUUAAUUGGAGUGCCACUUGCGUACUUGCAA--CCAAAUCCCAACGCGACUAGGGC--------AUC----UGCCCUCUCGCUCUUUCGG------------- ((((((....((((.......)))).))))))..(((((....)))))--............((((..(((((--------...----.))))).))))........------------- ( -26.80) >DroSim_CAF1 28726 92 - 1 GGCAUUAAGACAAUCAUUUUAAUUGGAGUGCCACUUGCGUACAUGCAA--CCAAAUCCCAACGCGACUAGGGC---------UC----UGCCCUCUCGCUCUUUCGG------------- ((((((....((((.......)))).))))))..(((((....)))))--............((((..(((((---------..----.))))).))))........------------- ( -24.10) >DroYak_CAF1 28420 106 - 1 GGCAUUAAGACAAUCAUUUUAAUUGGAGUGCCACUUGCGUACAUGCAA--CCAAAUCCCAACGCCACUAGGGC--------AUU----CGCCCUCUCGCUCUUUCAGUGCCUCUCUGUCU ((((((((((............((((..(.....(((((....)))))--....)..)))).((....(((((--------...----.)))))...))))))..))))))......... ( -25.10) >DroAna_CAF1 24708 107 - 1 GGCAUUAAGACAAUCAUUUUAAUUGAAGUGCCACUUGCGUACAUGCAAGUCCAAAUCCCAACGAGAGUGGACCCCAACGUCCUUCUCUUUCGCUUCCACUCAGUCUG------------- ((((((((((......))))))).((((((..(((((((....)))))))............(((((.((((......)))))))))...))))))......)))..------------- ( -26.60) >consensus GGCAUUAAGACAAUCAUUUUAAUUGGAGUGCCACUUGCGUACAUGCAA__CCAAAUCCCAACGCGACUAGGGC________AUC____UGCCCUCUCGCUCUUUCGG_____________ ((((((....((((.......)))).))))))..(((((....)))))..............((((..(((((................))))).))))..................... (-16.17 = -17.21 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:04 2006