Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,675,743 – 14,675,850 |
Length | 107 |
Max. P | 0.500000 |
Location | 14,675,743 – 14,675,850 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.79 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -20.98 |
Energy contribution | -21.62 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.16 |
Mean z-score | -1.49 |
Structure conservation index | 0.82 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14675743 107 + 23771897 AUAGCCUAAUUCGAAGCGCCAAUAUGGCGUAUGCGCCGCGUGUUCCGAGCGUGAAAUAA------AAGCACGCCAAGCGCGUCCCAUUAAAAAGGCAAAUAAACAAGUCAC-------AG ...((((........(((((.....)))))((((((.(((((((...(........)..------.)))))))...))))))..........))))...............-------.. ( -30.40) >DroSec_CAF1 25594 107 + 1 AUAGCCUAAUUCGAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUUCGAGCGUGAAAUAA------AAGCACGCCAAGCGCGUCCCAUUAAAAAGGCAAAUAAACAAGUCAC-------AC ...((((........((((.......))))((((((.((((((((..(........)..------))))))))...))))))..........))))...............-------.. ( -27.70) >DroSim_CAF1 26270 107 + 1 AUAGCCUAAUUCGAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUGCGAGCGUGAAAUAA------AAGCACGCCAAGCGCGUCCCAUUAAAAAGGCAAAUAAACAAGUCAC-------AG ...((((........((((.......))))(((((((((.....))).(((((......------...)))))...))))))..........))))...............-------.. ( -27.20) >DroEre_CAF1 26016 107 + 1 AUAGCCUAAUUCAAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUGCGAGCUUGAAAUAA------AAUCACGCCAAGUGCGACCCAUUAAAAAGGCAAAUAAACAAGUCAC-------AG ...((((..(((((.((.(((((((.(((....)))...)))))).).)))))))....------.....(((.....)))...........))))...............-------.. ( -23.20) >DroYak_CAF1 26340 107 + 1 AUAGCCUAAUUCAAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUGCGAGCCUGAAAUAA------AAGCACGCCAAGCGCGCCCCAUUAAAAAAGCAAAUAAACAAGACAC-------AG ...((..........((((.......))))..((((.(((((((...............------.)))))))...))))..............))...............-------.. ( -21.19) >DroAna_CAF1 22827 109 + 1 AUAGCCUAAUUUAAGGCGUUGGAAUUGCGUAUGCAUCGCGUGUUUUGAGCGUGAAAUAAAAAUAAAAACACGCCAA-----------UUAAAAGGCAAAUAAACAAGUCUGAGACACAAG ...((((......)))).........(((.......)))(((((((..(((((...............)))(((..-----------......)))..........))..)))))))... ( -24.66) >consensus AUAGCCUAAUUCAAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUGCGAGCGUGAAAUAA______AAGCACGCCAAGCGCGUCCCAUUAAAAAGGCAAAUAAACAAGUCAC_______AG ...((((........((((.......))))..((((.(((((((......................)))))))...))))............))))........................ (-20.98 = -21.62 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:03 2006