Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,673,727 – 14,673,818 |
Length | 91 |
Max. P | 0.627621 |
Location | 14,673,727 – 14,673,818 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -21.54 |
Consensus MFE | -12.29 |
Energy contribution | -13.52 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.10 |
Mean z-score | -2.32 |
Structure conservation index | 0.57 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14673727 91 - 23771897 -UACGCACAUAAAUAUGCU----GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC-------CGUU----------------- -....(((((((...((((----((................))))))(((.(((((....)))))..)))..)))))))......(((....-------))).----------------- ( -22.09) >DroSec_CAF1 23567 91 - 1 -UACGCACAUAAAUAUGCU----GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC-------CGUU----------------- -....(((((((...((((----((................))))))(((.(((((....)))))..)))..)))))))......(((....-------))).----------------- ( -22.09) >DroSim_CAF1 24380 91 - 1 -UACGCACAUAAAUAUGCU----GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC-------CGUU----------------- -....(((((((...((((----((................))))))(((.(((((....)))))..)))..)))))))......(((....-------))).----------------- ( -22.09) >DroEre_CAF1 23986 91 - 1 -UACGCACAUAAAUACGCU----GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUGC-------CAUU----------------- -....(((((((....(((----((................))))).(((.(((((....)))))..)))..))))))).............-------....----------------- ( -19.39) >DroYak_CAF1 24329 91 - 1 -UACGCACAUAAAUAUGCU----GAAAGCAAUCACAAUUCCUCAGCCGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC-------CGUU----------------- -....(((((((....(((----((................))))).(((.(((((....)))))..)))..)))))))......(((....-------))).----------------- ( -20.29) >DroAna_CAF1 20721 120 - 1 GUAUACACAUCAAUAUACACAUAAAAAACAUUCACAAAUUCUCAGCCAACUAUAGAAAAAUCUAUUUUUCAAUUAUGUGAACAUGCCGGGGUCUUCCCCCGUCGAAAGACAGCCCAGCUU (((((........)))))............((((((.......((....))...((((((....)))))).....))))))...((.((((.....))))(((....)))......)).. ( -23.30) >consensus _UACGCACAUAAAUAUGCU____GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC_______CGUU_________________ ...((((........((((.......)))).(((((....(((....))).(((((....)))))..........)))))....))))................................ (-12.29 = -13.52 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:00 2006