| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,672,577 – 14,672,692 |
| Length | 115 |
| Max. P | 0.993891 |
| Location | 14,672,577 – 14,672,692 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.74 |
| Mean single sequence MFE | -35.50 |
| Consensus MFE | -33.76 |
| Energy contribution | -33.73 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.43 |
| SVM RNA-class probability | 0.993891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14672577 115 - 23771897 UUUCU----UCAGCUGGCUUUGGCUGUUUUGUGGCGUAGACAAAACGGCGGCGAGCACGUUUCCGGUUGCGAACGGCACCGGAAUUAUAACAAGUUGUAAAUGAAAGGCAA-AAUUUGAU ....(----((((((.(((...((((((((((.......))))))))))))).)))....(((((((.((.....)))))))))((((((....)))))).))))......-........ ( -37.00) >DroSec_CAF1 22329 115 - 1 UUUCU----UCAGCUGGCUUUGGCUGUUUUGUGGGGUAGACAAAACGGCGGCGAGCACGUUUCCGGUUGCGAACGGCACCGGAAUUAUAACAAGUUGUAAAUGAAAGGCAA-AAUUUGAU ....(----((((((.(((...((((((((((.......))))))))))))).)))....(((((((.((.....)))))))))((((((....)))))).))))......-........ ( -37.00) >DroSim_CAF1 23220 115 - 1 UUUCU----UCAGCUGGCUUUGGCUGUUUUGUGGCGUAGACAAAACGGCGGCGAGCACGUUUCCGGUUGCGAACGGCACCGGAAUUAUAACAAGUUGUAAAUGAAAGGCAA-AAUUUGAU ....(----((((((.(((...((((((((((.......))))))))))))).)))....(((((((.((.....)))))))))((((((....)))))).))))......-........ ( -37.00) >DroEre_CAF1 22935 115 - 1 UUUCU----UCAGCUGGCUUUCGCUGUUUUGUGGCGUAGACAAAACGGCGGCGAGCACGUUUCCGGUUGCGAACGGCACCGGAAUUAUAACAAGUUGUAAAUGAAAGGCAA-AAUUUGAU ((((.----.(((((.((((((((((((((((.......)))))))))))).))))....(((((((.((.....)))))))))........))))).....)))).....-........ ( -37.90) >DroYak_CAF1 23196 119 - 1 UUUCUUGUUUCAGUUGGCUUUGGCUGUUUUGUAGCGUAGACAAAACGGCGGCGAGCACGUUUCCGGUUGCGAACGGCACCGGAAUUAUAACAAGUUGUAAAUGAAAGGCAA-AAUUUGAU ....(((((((((((.(((...((((((((((.......))))))))))))).)))....(((((((.((.....)))))))))((((((....)))))).))))..))))-........ ( -36.20) >DroAna_CAF1 19683 116 - 1 CUACU----GUUGUUGGCUUUUCCUAUUUUGUGGCGUAGACAAAACGGCGGCGAGCACGUUUCCGGUUGCGAACGGCAUCGGAAUUAUAACAAGUUGUAAAUGAAAGGCAAAAAUUUGAU .....----.......(((((((....((((..((........((((((.....)).))))((((((.((.....))))))))..........))..)))).)))))))........... ( -27.90) >consensus UUUCU____UCAGCUGGCUUUGGCUGUUUUGUGGCGUAGACAAAACGGCGGCGAGCACGUUUCCGGUUGCGAACGGCACCGGAAUUAUAACAAGUUGUAAAUGAAAGGCAA_AAUUUGAU ............(((.(((...((((((((((.......))))))))))))).)))....(((((((.((.....)))))))))......((((((.....(....).....)))))).. (-33.76 = -33.73 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:59 2006