Locus 5310

Sequence ID 3L_DroMel_CAF1
Location 14,671,847 – 14,671,955
Length 108
Max. P 0.953217
window8395

overview

Window 5

Location 14,671,847 – 14,671,955
Length 108
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.16
Mean single sequence MFE -23.58
Consensus MFE -19.99
Energy contribution -20.63
Covariance contribution 0.64
Combinations/Pair 1.09
Mean z-score -1.80
Structure conservation index 0.85
SVM decision value 1.43
SVM RNA-class probability 0.953217
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14671847 108 + 23771897
CUCAGGCUCUC-------UGCUCUCUCACUCAAAGCAAACUCACUCAUCGGUGGGUUUGUUUUGCUCCGCUCUUUCGCCGGUAAUCGGCAAUUGGCACUCAUUCCACUGCUU-UUU
...((((....-------............(((((((((((((((....)))))))))))))))....(((..((.((((.....))))))..)))............))))-... ( -30.70)
>DroSec_CAF1 21557 107 + 1
CUCU-GCUCUC-------UGCUCUCUCACUCAAAGCAAACUCACUCAACGGUGGCUUUGUUUUGCUCCGCUCUUUCGCCGGUAAUCGGCAAUUCGCACUCAUUCCACUGCUU-UUU
....-......-------(((.........(((((((((..((((....))))..)))))))))............((((.....)))).....)))...............-... ( -21.40)
>DroSim_CAF1 22452 107 + 1
CUCA-GCUCUC-------UGCUCUCUCACUCAAAGCAAACUCACUCAACGGUGGCUUUGUUUUGCUCCGCUCUUUCGCCGGUAAUCGGCAAUUCGCACUCAUUCCACUGCUU-UUU
...(-((....-------............(((((((((..((((....))))..)))))))))....((...((.((((.....))))))...))............))).-... ( -21.50)
>DroEre_CAF1 22159 115 + 1
CUCA-GCUCUCCGCUCUCCGCUCUCUCACUCAACGCAAACGCACUCAGCGGUGGCUUUGUUUUGCUCAGCUCUUUCGCCGGUAAUCGGCAAUUCGCACUCAUUCCACUGCUUUUUU
...(-((.....)))...................((....))....((((((((...((...(((...(......)((((.....)))).....)))..))..))))))))..... ( -22.60)
>DroYak_CAF1 22400 108 + 1
CUCA-GCUCUC-------CGCUCUCUCACUCAAGGCAAACGCACUCAACGUUGGCUUUGUUUUGCUCAGCUCUUUCGCCGGUAAUCGGCAAUUCGCGCUCAUUCCACUGCCGUUUU
...(-((.(..-------.(((........((((((.((((.......)))).))))))........)))......((((.....)))).....).)))................. ( -21.69)
>consensus
CUCA_GCUCUC_______UGCUCUCUCACUCAAAGCAAACUCACUCAACGGUGGCUUUGUUUUGCUCCGCUCUUUCGCCGGUAAUCGGCAAUUCGCACUCAUUCCACUGCUU_UUU
.....((...........(((.........(((((((((.(((((....))))).)))))))))............((((.....)))).....)))...........))...... (-19.99 = -20.63 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:58 2006