| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,668,020 – 14,668,113 |
| Length | 93 |
| Max. P | 0.584384 |
| Location | 14,668,020 – 14,668,113 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -19.80 |
| Energy contribution | -20.58 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14668020 93 + 23771897 -------------AUGGUGGCACCACCAAAAAUGCAAUCGAACUUUUCGCGUUUGACUUGCGGUAGUUGGAC-GGGAAAAGUCCCCG------------GAAAACCUAAGGU-AAAUCGU -------------.(((((....)))))..........((((((((((.((((..(((......)))..)))-).)))))))((..(------------(....))...)).-...))). ( -29.10) >DroSec_CAF1 17775 93 + 1 -------------AUGGUGGCACCACCAAAAAUGCAAUCGAACUUUUCGCGUUUGACUUGCGGUAGUUGGAC-GGGAAAAGUCCCCG------------GAAUACCUAAGGU-AAAUCGU -------------.(((((....)))))...........(.(((((((.((((..(((......)))..)))-).))))))).).((------------(..((((...)))-)..))). ( -30.30) >DroSim_CAF1 18600 93 + 1 -------------GUGGUGGCACCACCAAAAAUGCAAUCGAACUUUUCGCGUUUGACUUGCGGUAGUUGGAC-GGGAAAAGUCCCCG------------GAAAACCUAAGGU-AAAUCGU -------------.(((((....)))))..........((((((((((.((((..(((......)))..)))-).)))))))((..(------------(....))...)).-...))). ( -29.00) >DroEre_CAF1 18315 93 + 1 -------------AUGGUGGCACCGCCAAAAAUGCAAUCGAACUUUUCGCAUUUGACUUGCGGUAGUGGGAC-GGGAAAAGUCCCCG------------GAAAACCUGAGGU-AAAUCGU -------------.(((((....)))))..........((((((..(((((.......))))).)))(((((-.......)))))((------------(.....)))....-...))). ( -24.10) >DroYak_CAF1 18592 105 + 1 -------------AUGGUGGCACCGCCAAAAAUGCAAUCGAACUUUUCGCAUUUGACUUGCGAUAGUGGGAC-GGGAAAAGUCCCCGGAAAAGUGCCCGGAAAACCUGAGGU-AAAUCGC -------------.(((((....)))))..........(((((((((((((.......)))....(.(((((-.......)))))).)))))))((((((.....))).)))-...))). ( -32.20) >DroAna_CAF1 15366 101 + 1 CCAAGUGAGCGAAGUGAGUGUGCCGCCAAAAAUGCAAUCGAACUUUUCGUGUUUGGCUUGCGGUAGUUGGACCGGGGAAAGUCACCA---------------UCCUUGUGGCUAAA---- (((...(((.((.((((.(...((.((......((((((((((.......)))))).))))(((......)))))))..).))))..---------------))))).))).....---- ( -26.80) >consensus _____________AUGGUGGCACCACCAAAAAUGCAAUCGAACUUUUCGCGUUUGACUUGCGGUAGUUGGAC_GGGAAAAGUCCCCG____________GAAAACCUAAGGU_AAAUCGU ...............(((...(((.((((...(((((((((((.......)))))).)))))....))))...((((....))))........................)))...))).. (-19.80 = -20.58 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:54 2006