Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,661,351 – 14,661,448 |
Length | 97 |
Max. P | 0.500000 |
Location | 14,661,351 – 14,661,448 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 86.38 |
Mean single sequence MFE | -19.41 |
Consensus MFE | -16.54 |
Energy contribution | -16.77 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.08 |
Mean z-score | -1.48 |
Structure conservation index | 0.85 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14661351 97 - 23771897 GUGUUUGUACUUGGUAAUAUAUUUGUGAGCAUUAUUUUAUUUCGUAUACCUGUUACUCGUGAACGGGUAUAUUAGACUCGCCAUGUAGUAAAUAAUA .(((((((((.((((........((....))........(((.(((((((((((.(....)))))))))))).)))...)))).))).))))))... ( -21.20) >DroSec_CAF1 11199 84 - 1 GUGUUUGUGCUUGGUAAUAUAUUUGUGAGCAUUAUUUUGUUUCGUAUACCUUUUACUCGUAAGCGGGUAUAU-AGACUCGU------------AAUA (.(((((((...(((((((....)))(((((......)))))....))))...((((((....)))))))))-)))).)..------------.... ( -16.00) >DroSim_CAF1 11811 85 - 1 GUGUUUGUGCUUGGUAAUAUAUUUGUGAGCAUUAUUUUGUUUCGUAUACCUGUUACUCGUAAGCGGGUAUAUUAGACUCGC------------AAUA (((...((((((..............))))))......((((.(((((((((((.......))))))))))).)))).)))------------.... ( -21.04) >consensus GUGUUUGUGCUUGGUAAUAUAUUUGUGAGCAUUAUUUUGUUUCGUAUACCUGUUACUCGUAAGCGGGUAUAUUAGACUCGC____________AAUA (((((..((..((......))..))..)))))......((((.(((((((((((.......))))))))))).)))).................... (-16.54 = -16.77 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:46 2006