Locus 5303

Sequence ID 3L_DroMel_CAF1
Location 14,661,023 – 14,661,143
Length 120
Max. P 0.600768
window8381

overview

Window 1

Location 14,661,023 – 14,661,143
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.33
Mean single sequence MFE -37.07
Consensus MFE -30.91
Energy contribution -31.63
Covariance contribution 0.73
Combinations/Pair 1.14
Mean z-score -1.78
Structure conservation index 0.83
SVM decision value 0.14
SVM RNA-class probability 0.600768
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14661023 120 - 23771897
AAGGGGAAUGGCAUCCCCACACUUCGUUAGUGAAACAAGUAGCUGGGACAAGGACCAGGACCAGGACCCCUGGCCGGCAAACUGGACAGCUGCAAGGACAUAAAACAGUGAAGUUUUGCA
..(((((......)))))...........(..((((..(((((((...((..(.((.((.(((((...))))))))))....))..))))))).....(((......)))..))))..). ( -40.40)
>DroSec_CAF1 10901 120 - 1
AAGGGGAAUGGCAUCCCCACACUUCGUUAGUGAAACAAGUAGCUGGGACAAGGACCAGGACCAGGACCCCUGGCCGGCAAACUGGACAGCUGCAAGGACAUAAAACAGUGAAGUUUUGCA
..(((((......)))))...........(..((((..(((((((...((..(.((.((.(((((...))))))))))....))..))))))).....(((......)))..))))..). ( -40.40)
>DroSim_CAF1 11513 120 - 1
AAGGGGAAUGGCAUCCCCACACUUCGUUAGUGAAACAAGUAGCUGGGACAAGGACCAGGACCAGGACCCCUGGCCGGCAAACUGGACAGCUGCAAGGACAUAAAACAGUGAAGUUUUGCA
..(((((......)))))...........(..((((..(((((((...((..(.((.((.(((((...))))))))))....))..))))))).....(((......)))..))))..). ( -40.40)
>DroEre_CAF1 11255 113 - 1
AAGGGGAGUGGCAUGCCCACACUUCGUUAGAGUAACAAGUAGCUGGUACAAGGACC-------GGACUCCUGGCCGGCAAACUGGACAGCUGCAAGGACAUAAAACAGUGAAGUUUUGCA
.......(..((.((.(((.((((.((((...)))))))).((((((...((((..-------....)))).))))))....))).))))..).......((((((......)))))).. ( -30.40)
>DroYak_CAF1 11407 120 - 1
AAGGGGCACGGCAUCCCCACACUUCGUUAGAGGAGCAAGUAGCUGGGACAAGGACCAGGACCAGGACCCCUGGCCGGCAAACUGGACAGCUGCAAGGACAUAAAACAGUGAAGUUUUGCA
..((((........))))...((((....)))).(((((((((((...((..(.((.((.(((((...))))))))))....))..))))))).....(((......))).....)))). ( -38.40)
>DroAna_CAF1 10778 106 - 1
AAGGGGA-----AUCCCCGCACUUCGUUAGAGAAACAAGUAGCUGG---------CCGAACAAGGACCUCUGGCUGGUCAACUGGACAGCUGCAAGGACAUAAAACAGUGAAGUUUUGCA
..((((.-----..))))((((((((((.....)))..(((((((.---------(((......((((.......))))...))).)))))))................)))))...)). ( -32.40)
>consensus
AAGGGGAAUGGCAUCCCCACACUUCGUUAGAGAAACAAGUAGCUGGGACAAGGACCAGGACCAGGACCCCUGGCCGGCAAACUGGACAGCUGCAAGGACAUAAAACAGUGAAGUUUUGCA
..(((((......)))))...........(..((((..(((((((.........(((((.........)))))((((....)))).))))))).....(((......)))..))))..). (-30.91 = -31.63 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:45 2006