Locus 5302

Sequence ID 3L_DroMel_CAF1
Location 14,660,738 – 14,660,855
Length 117
Max. P 0.969993
window8380

overview

Window 0

Location 14,660,738 – 14,660,855
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.59
Mean single sequence MFE -24.52
Consensus MFE -20.78
Energy contribution -20.94
Covariance contribution 0.16
Combinations/Pair 1.10
Mean z-score -1.95
Structure conservation index 0.85
SVM decision value 1.65
SVM RNA-class probability 0.969993
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14660738 117 - 23771897
UUCAUUGAGUGAAUGCUGCGGUCACUCUUUGUGAUGAAAUGGUUAAAAUGUUUGCCAAACAAAAAGGUAACCAGGAGUCAUAAAUAA---UUAAUGAAAAUGUAAGGAACAAAGAAAGAG
((((((((((((.((...)).))))))((((((((....((((((.....((((.....))))....))))))...))))))))...---..))))))...................... ( -25.40)
>DroSec_CAF1 10616 117 - 1
UUCAUUGAGUGAAUGCUGCGGUCACUCUUUGUGAUGAAAUGGUUAAAAUGUUUGCCAAACAAAAAGGUAACCAGGAGUCAUUAUUAA---UGAAAGGAAAUGUAAGGAAUAAAGAAAGAC
((((((((...((((((.(.(((((.....)))))....((((((.....((((.....))))....))))))).)).)))).))))---)))).......................... ( -25.00)
>DroSim_CAF1 11226 116 - 1
UUCAUUGAGUGAAUGCUGCGGUCACUCUUUGUGAUGAAAUGGUUAAAAUGUUUGCCAAACAAAAA-GUAACCAGGAGUCAUUAAUAA---UGAAAGAAAAUGUAAGGAAUAAAGAAAGAC
((((((((((((.((...)).))))))....((((((..((((((.....((((.....))))..-.))))))....))))))..))---)))).......................... ( -22.80)
>DroEre_CAF1 10970 120 - 1
UUCAUUGAGUGAAUGCUGCGGUCACUCUUUGUGAUGAAAUGGUUGAAAUGUUUGCCAAACAAAAAGGUAACCAGCACUCAUAAAUAAUGAUGAAAGGAAAUAAGAGGAAUAAAGGAGGAC
((((((((((((.((...)).))))))(((((((((...((((((.....((((.....))))....)))))).)).)))))))....)))))).......................... ( -24.20)
>DroYak_CAF1 11117 114 - 1
UUCAUUGAGUGAAUGCUGCGGUCACUCUUUGUGAUGAAAUGGUUGAAAUGUUUGCCAAACGAAAAGGUAACCAGCAGUCAUAAAUAAUGAUGAAAGAAUAUUAAAGGAAUAAAG------
((((((((((((.((...)).))))))((((((((....((((((.....((((.....))))....))))))...))))))))....))))))....................------ ( -25.20)
>consensus
UUCAUUGAGUGAAUGCUGCGGUCACUCUUUGUGAUGAAAUGGUUAAAAUGUUUGCCAAACAAAAAGGUAACCAGGAGUCAUAAAUAA___UGAAAGAAAAUGUAAGGAAUAAAGAAAGAC
(((...((((((.((...)).))))))((((((((....((((((.....((((.....))))....))))))...))))))))...........)))...................... (-20.78 = -20.94 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:44 2006