Locus 530

Sequence ID 3L_DroMel_CAF1
Location 1,554,905 – 1,555,018
Length 113
Max. P 0.693548
window800

overview

Window 0

Location 1,554,905 – 1,555,018
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -26.00
Consensus MFE -15.44
Energy contribution -16.88
Covariance contribution 1.44
Combinations/Pair 1.12
Mean z-score -2.17
Structure conservation index 0.59
SVM decision value 0.33
SVM RNA-class probability 0.693548
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1554905 113 + 23771897
CUUCUUGCUGACCCAAAUCCGUCCAAACAUUGUUGCAGUGCUGUCACAAAUUUUGGGGCAACAUGGAAAAGAUUCAUAGAACACAUAUGAACUUAUCAAGAUAAGAACAUUUU-------
.((((((((((......((((((((((..((((.(((....))).))))..)))))(....)))))).(((.((((((.......))))))))).)).)).))))))......------- ( -24.10)
>DroSec_CAF1 12625 120 + 1
CUUCUUGCUGACCCAAAUCCUUCCAAACAUUGUUGCAGUGCUGUCACAAAUUUUGGGGCAACAUGGAAAAGAUUCAUAGAACACAUAUGAAUUCAUCAAGCCAAGAACAUUUUCAACACC
.((((((((((......(((..(((((..((((.(((....))).))))..)))))(....)..)))...((((((((.......))))))))..)).)).))))))............. ( -25.00)
>DroSim_CAF1 12767 120 + 1
CUUCUUGCUGACCCAAAUCCGUCCAAACAUUGUUGCAGUGCUGUCACAAAUUUUGGGGCAACAUGGAAAAGAUUCAUAGAACACAUAUGAAUUCAUCAAGCUAAGAACAUUUUCAACACC
.((((((((((......((((((((((..((((.(((....))).))))..)))))(....))))))...((((((((.......))))))))..)).))).)))))............. ( -26.50)
>DroYak_CAF1 13523 101 + 1
UUUCUUGCUGACCCAAAUCCGUCCAAGCAUUGUUGCAGUGUUGUCAUGAAUUUUGGGGCAGCAUGAAAA-------------------GAAUUUAGCAAGCUAAGAACAUUUUCAACUCC
.....(((((.((((((..(((...(((((((...)))))))...)))...)))))).)))))((((((-------------------...(((((....)))))....))))))..... ( -28.40)
>consensus
CUUCUUGCUGACCCAAAUCCGUCCAAACAUUGUUGCAGUGCUGUCACAAAUUUUGGGGCAACAUGGAAAAGAUUCAUAGAACACAUAUGAAUUCAUCAAGCUAAGAACAUUUUCAACACC
.((((((((........((((((((((..((((.(((....))).))))..)))))(....))))))...((((((((.......)))))))).....)).))))))............. (-15.44 = -16.88 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:27 2006