Locus 5298

Sequence ID 3L_DroMel_CAF1
Location 14,654,726 – 14,654,816
Length 90
Max. P 0.716326
window8374

overview

Window 4

Location 14,654,726 – 14,654,816
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 96.46
Mean single sequence MFE -26.33
Consensus MFE -22.78
Energy contribution -23.03
Covariance contribution 0.25
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 0.39
SVM RNA-class probability 0.716326
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14654726 90 - 23771897
UUCCUGCAUUAAAACGCCAUCAAGCUGGAGAUUAAUGUGAAAAGGUCACGCCCAGCUCCUU-GGGAGGUGAAAGCCAUUCACUUCAGCGAG
....(((.........(((...((((((.(.....(((((.....))))))))))))...)-))((((((((.....)))))))).))).. ( -26.60)
>DroSec_CAF1 4551 90 - 1
UUCCUGCAUUAAAACGCCAUCAGGCUGGAGAUUAAUGUGAAAAGGUCACGCCCAGCUCCUU-GGGAGGUGAAAGCCAUUCACUUCAGCGAG
....(((.........(((...((((((.(.....(((((.....))))))))))))...)-))((((((((.....)))))))).))).. ( -26.60)
>DroSim_CAF1 4565 90 - 1
UUCCUGCAUUAAAACGCCAUCAGGCUGGAGAUUAAUGUGAAAAGGUCACGCCCAGCUCCUU-GGGAGGUGAAAGCCAUUCACUUCAGCGAG
....(((.........(((...((((((.(.....(((((.....))))))))))))...)-))((((((((.....)))))))).))).. ( -26.60)
>DroEre_CAF1 4940 90 - 1
UUCCUGCAUUAAAACGCCAUCAGGCUGGAGAUUAAUGUGAAAAGGUCACGCCCAGCUCCUU-GGGAGGUGAAAGCCAUUCACUUCAGCAAG
....(((.........(((...((((((.(.....(((((.....))))))))))))...)-))((((((((.....)))))))).))).. ( -27.30)
>DroYak_CAF1 4529 90 - 1
UUCCUGCAUUAAAACGCCAUCAGGCUGGAGAUUAAUGUGAAAAGGUCACGCCCAGCUCCUU-GCGAGGUGAAAGCCAUUCACUUCAGCAAG
...............(((....))).((((.....(((((.....))))).....))))((-((((((((((.....)))))))).)))). ( -26.60)
>DroAna_CAF1 4646 91 - 1
UUCCUGCAUUAAAAUGCCAUCAUGCUGGAGAUUAAUGCGAAAAGGUCACGCCCAGCUCCUUUCGGAGGUGAAAGCCAUUCACUUCAGCAAC
.....((((....)))).....((((((((...(((((.....((.....))((.((((....)))).))...).))))..)))))))).. ( -24.30)
>consensus
UUCCUGCAUUAAAACGCCAUCAGGCUGGAGAUUAAUGUGAAAAGGUCACGCCCAGCUCCUU_GGGAGGUGAAAGCCAUUCACUUCAGCAAG
....(((........(((....))).((((.....(((((.....))))).....)))).....((((((((.....)))))))).))).. (-22.78 = -23.03 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:38 2006