Locus 5296

Sequence ID 3L_DroMel_CAF1
Location 14,647,058 – 14,647,174
Length 116
Max. P 0.546242
window8371

overview

Window 1

Location 14,647,058 – 14,647,174
Length 116
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 87.55
Mean single sequence MFE -24.69
Consensus MFE -19.34
Energy contribution -20.02
Covariance contribution 0.69
Combinations/Pair 1.12
Mean z-score -1.42
Structure conservation index 0.78
SVM decision value 0.03
SVM RNA-class probability 0.546242
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14647058 116 + 23771897
UCUCAGCAUCUGACUAUAAUCGGCUUCAAUCCGGCAUUUGGUCUAGUUUCAGUC-UUGCCGGAAUUUCGGCUUAACGUUUUUGCGCUGCGUCCUUCUAUGAUUCUCUCUAUUUAUUU
.(.((((..............((((....(((((((.((((.......))))..-.))))))).....))))....((....)))))).)........................... ( -22.20)
>DroSec_CAF1 45812 117 + 1
UCUCAGCAUCUGACUAUAAUCGGCUUCAAUCCGGCAUUUGGUCUAGUUUCAGUCGUUGCCGGAAUUUCGGCUUAACGUUUUUGUGCUUCGUCCUUCUAUGAUUCUCUCUAUUUAUUU
....(((((..(((.......((((....(((((((.((((.......))))....))))))).....))))....)))...)))))((((......))))................ ( -21.00)
>DroSim_CAF1 42716 116 + 1
UCUCAGCAUCUGACUAUAAUCGGCUUCAAUCCGGCAUUUGGUCUAGUUUCAGAC-UUGCCGGAAUUUCGGCUUAACCUUUUUGUGCUGCGUCCUUCUAUGAUUCUCUCUAUUUAUUU
.(.((((((..((........((((....(((((((...(((((......))))-)))))))).....))))......))..)))))).)........................... ( -25.94)
>DroEre_CAF1 49433 106 + 1
UCUCGGCAGCUGACUCUAAUCGGCCGCAAUCCUGCAUCUGGUCUAGUUUCAGUC-CUGCCGGAAUUUGGGCUUAACGUUUUUGUGCUGAUUCC----------CUAUUUAUUUACUU
....(((((((((..((((((((..(((....)))..))))).)))..))))..-)))))((((((.(.((...........)).).))))))----------.............. ( -29.60)
>consensus
UCUCAGCAUCUGACUAUAAUCGGCUUCAAUCCGGCAUUUGGUCUAGUUUCAGUC_UUGCCGGAAUUUCGGCUUAACGUUUUUGUGCUGCGUCCUUCUAUGAUUCUCUCUAUUUAUUU
...((((((..(((.......((((....(((((((.((((.......))))....))))))).....))))....)))...))))))............................. (-19.34 = -20.02 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:36 2006