Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,636,147 – 14,636,241 |
Length | 94 |
Max. P | 0.589999 |
Location | 14,636,147 – 14,636,241 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.51 |
Mean single sequence MFE | -17.12 |
Consensus MFE | -10.55 |
Energy contribution | -10.42 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.35 |
Mean z-score | -1.80 |
Structure conservation index | 0.62 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14636147 94 - 23771897 CUCCUCCACUAAUUUCUUUUUCUCCUAU---CGGGU------CUCAUUAAAGAACCGCUUUAGAUCAGGCA-UUUUCUGAUUUUUACAAUAUCUGGUAGUUUUC ........................((((---(((((------.....(((((.....)))))(((((((..-...)))))))........)))))))))..... ( -15.20) >DroSec_CAF1 35000 94 - 1 CUCCUCCACUAAUUUCUUUUUCUCCUAU---CGGAU------CUCAUUAAAGAACCGCUUUAGAUCAGGCA-UUUUCUGAUUUUUACAAUAGCUGGGAGUUUUC .....................((((((.---.((.(------((......))).))(((..((((((((..-...)))))))).......)))))))))..... ( -18.50) >DroSim_CAF1 31241 94 - 1 CUCCUCCACUAAUUUCUUUUUCUCCUAU---CGGGU------CUCAUUAAAGAACCGCUUUAGAUCAGGCA-UUUUCUGAUUUUUACAAUAGCUGGGAGUUUUC .....................((((((.---.((.(------((......))).))(((..((((((((..-...)))))))).......)))))))))..... ( -18.50) >DroEre_CAF1 38322 94 - 1 CUCCUCCACUAAUUUCUUGUUCUCCUAU---CGGGU------ACCAUUAAAUAACCGCUUUAGAUCGGGCA-UUUUCUGAUUUUUACAAUAGCUGGGAGUUUCC .....................((((((.---..(((------...........)))(((..((((((((..-...)))))))).......)))))))))..... ( -15.40) >DroYak_CAF1 38789 94 - 1 CUCCUCCACUAAUUUCUUUUUCUCCUAU---CGGGU------CUCAUUAGAGAACCGCUUUAGAUCAGGCA-UUUUCUGAUUUUUACAAUAGCUGGGAGUUUUC .....................((((((.---.((.(------(((....)))).))(((..((((((((..-...)))))))).......)))))))))..... ( -22.00) >DroAna_CAF1 33308 96 - 1 CUCCU---CUAAAUUCUUCUUCUACCAUAAUCAGGCAAUGUCCUUCCUUCAGAUC--CCUUAGAACACUCAAGAUUGUGAUUUAAACAUUGGUUGGUAAUC--- .....---.....................(((((.((((((.((......))...--..(((((.(((........))).))))))))))).)))))....--- ( -13.10) >consensus CUCCUCCACUAAUUUCUUUUUCUCCUAU___CGGGU______CUCAUUAAAGAACCGCUUUAGAUCAGGCA_UUUUCUGAUUUUUACAAUAGCUGGGAGUUUUC .....................((((((.....(((.......)))...........(((..((((((((......)))))))).......)))))))))..... (-10.55 = -10.42 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:35 2006